Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 SUPT20HL2-201ENST00000486479 2409 ntBASIC12.57□□□□□ -0.4
HLA-DMBP28068 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 AL603832.2-201ENST00000566195 2125 ntBASIC12.56□□□□□ -0.4
HLA-DMBP28068 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 GPAA1P2-202ENST00000606848 1787 ntBASIC12.56□□□□□ -0.4
HLA-DMBP28068 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 AP002414.2-201ENST00000591780 3365 ntBASIC12.56□□□□□ -0.4
HLA-DMBP28068 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 LAGE3P1-201ENST00000425356 484 ntBASIC12.56□□□□□ -0.4
HLA-DMBP28068 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 AC018712.1-201ENST00000455767 687 ntBASIC12.56□□□□□ -0.4
HLA-DMBP28068 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 AC091167.2-201ENST00000579581 588 ntBASIC12.56□□□□□ -0.4
HLA-DMBP28068 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 AC006557.2-201ENST00000592985 1240 ntBASIC12.56□□□□□ -0.4
HLA-DMBP28068 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 AC107918.4-202ENST00000641623 219 ntBASIC12.56□□□□□ -0.4
HLA-DMBP28068 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC12.56□□□□□ -0.4
HLA-DMBP28068 PRAL-201ENST00000624952 3286 ntBASIC12.56□□□□□ -0.4
HLA-DMBP28068 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HLA-DMBP28068 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms