Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
LMX1BO60663 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.47□□□□□ -0.09
LMX1BO60663 ARTN-206ENST00000472435 402 ntTSL 3 BASIC14.47□□□□□ -0.09
LMX1BO60663 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC14.47□□□□□ -0.09
LMX1BO60663 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.47□□□□□ -0.09
LMX1BO60663 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.47□□□□□ -0.09
LMX1BO60663 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
LMX1BO60663 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
LMX1BO60663 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.47□□□□□ -0.09
LMX1BO60663 C20orf181-201ENST00000623918 480 ntBASIC14.47□□□□□ -0.09
LMX1BO60663 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.47□□□□□ -0.09
LMX1BO60663 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.47□□□□□ -0.09
LMX1BO60663 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.47□□□□□ -0.09
LMX1BO60663 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.47□□□□□ -0.09
LMX1BO60663 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.47□□□□□ -0.09
LMX1BO60663 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.47□□□□□ -0.09
LMX1BO60663 AL603832.2-201ENST00000566195 2125 ntBASIC14.47□□□□□ -0.09
LMX1BO60663 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
LMX1BO60663 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC14.46□□□□□ -0.09
LMX1BO60663 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
LMX1BO60663 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 REXO1L8P-201ENST00000604378 1897 ntBASIC14.46□□□□□ -0.09
LMX1BO60663 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.46□□□□□ -0.09
LMX1BO60663 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.46□□□□□ -0.09
LMX1BO60663 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
LMX1BO60663 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
LMX1BO60663 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC14.46□□□□□ -0.09
LMX1BO60663 VN2R19P-201ENST00000442399 1052 ntBASIC14.46□□□□□ -0.09
LMX1BO60663 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LMX1BO60663 CYMP-203ENST00000474680 1263 ntBASIC14.46□□□□□ -0.09
LMX1BO60663 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC14.46□□□□□ -0.09
LMX1BO60663 AC107918.2-201ENST00000530817 355 ntBASIC14.46□□□□□ -0.09
LMX1BO60663 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.46□□□□□ -0.09
LMX1BO60663 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
LMX1BO60663 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC14.46□□□□□ -0.09
LMX1BO60663 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
LMX1BO60663 MIR3197-201ENST00000582241 73 ntBASIC14.46□□□□□ -0.09
LMX1BO60663 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.46□□□□□ -0.09
LMX1BO60663 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
LMX1BO60663 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
LMX1BO60663 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.46□□□□□ -0.09
LMX1BO60663 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
LMX1BO60663 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.46□□□□□ -0.09
LMX1BO60663 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.46□□□□□ -0.09
LMX1BO60663 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.46□□□□□ -0.09
LMX1BO60663 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
LMX1BO60663 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.46□□□□□ -0.1
LMX1BO60663 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
LMX1BO60663 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
LMX1BO60663 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LMX1BO60663 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
LMX1BO60663 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
LMX1BO60663 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LMX1BO60663 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 AC006449.6-201ENST00000612330 2296 ntBASIC14.45□□□□□ -0.1
LMX1BO60663 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.45□□□□□ -0.1
LMX1BO60663 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.45□□□□□ -0.1
LMX1BO60663 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.45□□□□□ -0.1
LMX1BO60663 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC14.45□□□□□ -0.1
LMX1BO60663 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
LMX1BO60663 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC14.45□□□□□ -0.1
LMX1BO60663 CNN2P11-201ENST00000429351 262 ntBASIC14.45□□□□□ -0.1
LMX1BO60663 HTR5BP-201ENST00000430851 1154 ntBASIC14.45□□□□□ -0.1
LMX1BO60663 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
LMX1BO60663 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.45□□□□□ -0.1
LMX1BO60663 ALG1L5P-201ENST00000482043 771 ntBASIC14.45□□□□□ -0.1
LMX1BO60663 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMX1BO60663 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms