Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 AL671277.1-201ENST00000429656 993 ntBASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 ALG1L5P-201ENST00000482043 771 ntBASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 PRYP6-201ENST00000514804 343 ntBASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 AL135744.1-201ENST00000565098 629 ntBASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 C20orf181-201ENST00000623918 480 ntBASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
AP4E1Q9UPM8 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 AKAP8P1-201ENST00000434743 1349 ntBASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 ADH5P3-201ENST00000433842 1137 ntBASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
AP4E1Q9UPM8 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
AP4E1Q9UPM8 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.02■□□□□ 0.31
AP4E1Q9UPM8 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
AP4E1Q9UPM8 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.02■□□□□ 0.31
AP4E1Q9UPM8 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
AP4E1Q9UPM8 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
AP4E1Q9UPM8 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.02■□□□□ 0.31
AP4E1Q9UPM8 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
AP4E1Q9UPM8 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms