Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 AL450487.1-201ENST00000426799 995 ntBASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 RN7SL510P-201ENST00000581311 263 ntBASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 TP73-AS1-207ENST00000624167 988 ntBASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC39Q9UFE4 TOP3BP1-201ENST00000420768 1380 ntBASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 RPS2P28-201ENST00000314255 741 ntBASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 KRT18P27-201ENST00000427733 1299 ntBASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 AC087163.2-201ENST00000457299 853 ntBASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 AC136632.2-201ENST00000512891 861 ntBASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 GGTLC5P-201ENST00000617623 998 ntBASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 MIR1199-201ENST00000621445 119 ntBASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 LINC00895-201ENST00000629028 1637 ntBASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 AL603832.2-201ENST00000566195 2125 ntBASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC39Q9UFE4 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 NORAD-201ENST00000565493 5339 ntBASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 AC073621.1-201ENST00000392730 636 ntBASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 KRT18P67-201ENST00000432816 1264 ntBASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 FAAHP1-202ENST00000446499 1238 ntBASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 RPS15P9-201ENST00000494093 319 ntBASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 AL691432.3-201ENST00000621860 400 ntBASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 AC008735.5-201ENST00000623544 497 ntBASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC39Q9UFE4 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms