Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 AC073389.1-201ENST00000595595 795 ntBASIC17.56■□□□□ 0.4
SIX2Q9NPC8 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 GPX1P2-201ENST00000429271 606 ntBASIC17.55■□□□□ 0.4
SIX2Q9NPC8 ADH5P3-201ENST00000433842 1137 ntBASIC17.55■□□□□ 0.4
SIX2Q9NPC8 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 AC112191.1-201ENST00000523689 701 ntBASIC17.55■□□□□ 0.4
SIX2Q9NPC8 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 RARRES2P8-201ENST00000566335 367 ntBASIC17.55■□□□□ 0.4
SIX2Q9NPC8 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 AC091812.2-201ENST00000619081 385 ntBASIC17.55■□□□□ 0.4
SIX2Q9NPC8 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 AC092902.6-201ENST00000641783 218 ntBASIC17.55■□□□□ 0.4
SIX2Q9NPC8 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX2Q9NPC8 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 PGAM5P1-201ENST00000518923 814 ntBASIC17.54■□□□□ 0.4
SIX2Q9NPC8 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 MIR4321-201ENST00000592276 80 ntBASIC17.54■□□□□ 0.4
SIX2Q9NPC8 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.54■□□□□ 0.4
SIX2Q9NPC8 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX2Q9NPC8 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms