Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
POLR2J3Q9H1A7 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
POLR2J3Q9H1A7 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
POLR2J3Q9H1A7 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.24■□□□□ 0.03
POLR2J3Q9H1A7 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
POLR2J3Q9H1A7 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
POLR2J3Q9H1A7 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
POLR2J3Q9H1A7 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
POLR2J3Q9H1A7 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.24■□□□□ 0.03
POLR2J3Q9H1A7 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 MIR1224-201ENST00000408193 85 ntBASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 SKP2-204ENST00000508514 821 ntTSL 3 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 MIR1199-201ENST00000621445 119 ntBASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
POLR2J3Q9H1A7 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 IGHV3-65-201ENST00000523210 341 ntBASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 AF238378.1-201ENST00000526806 358 ntBASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
POLR2J3Q9H1A7 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 AC092384.3-202ENST00000564646 2873 ntBASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
POLR2J3Q9H1A7 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms