Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAIPQ9BWF2 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 AL035456.1-201ENST00000456064 1369 ntBASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAIPQ9BWF2 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.96■□□□□ 0.46
TRAIPQ9BWF2 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 AC241585.1-201ENST00000433527 519 ntBASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 AC004890.2-204ENST00000481968 304 ntBASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 RN7SL204P-201ENST00000582831 262 ntBASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 AL390754.1-201ENST00000619088 582 ntBASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 AC073592.8-201ENST00000624126 511 ntBASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRAIPQ9BWF2 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 AC002472.2-201ENST00000442739 958 ntBASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAIPQ9BWF2 TSPY16P-201ENST00000449843 468 ntBASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms