Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SDHD-202ENST00000525291 790 ntTSL 3 BASIC16.84■□□□□ 0.29
CDX2Q99626 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC16.84■□□□□ 0.29
CDX2Q99626 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC16.84■□□□□ 0.29
CDX2Q99626 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
CDX2Q99626 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CDX2Q99626 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.84■□□□□ 0.29
CDX2Q99626 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC16.84■□□□□ 0.29
CDX2Q99626 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
CDX2Q99626 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC16.84■□□□□ 0.29
CDX2Q99626 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.84■□□□□ 0.29
CDX2Q99626 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.84■□□□□ 0.29
CDX2Q99626 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.84■□□□□ 0.29
CDX2Q99626 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.84■□□□□ 0.29
CDX2Q99626 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.84■□□□□ 0.29
CDX2Q99626 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.84■□□□□ 0.29
CDX2Q99626 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CDX2Q99626 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.84■□□□□ 0.29
CDX2Q99626 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.84■□□□□ 0.29
CDX2Q99626 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
CDX2Q99626 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.83■□□□□ 0.29
CDX2Q99626 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CDX2Q99626 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CDX2Q99626 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CDX2Q99626 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CDX2Q99626 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CDX2Q99626 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.83■□□□□ 0.28
CDX2Q99626 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CDX2Q99626 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC16.83■□□□□ 0.28
CDX2Q99626 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CDX2Q99626 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CDX2Q99626 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CDX2Q99626 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CDX2Q99626 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
CDX2Q99626 AL355312.1-201ENST00000407115 2176 ntBASIC16.83■□□□□ 0.28
CDX2Q99626 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
CDX2Q99626 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CDX2Q99626 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.83■□□□□ 0.28
CDX2Q99626 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CDX2Q99626 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.83■□□□□ 0.28
CDX2Q99626 AC044849.1-201ENST00000519737 1188 ntBASIC16.83■□□□□ 0.28
CDX2Q99626 LY6E-208ENST00000520531 490 ntTSL 2 BASIC16.83■□□□□ 0.28
CDX2Q99626 PTK2-225ENST00000520892 571 ntTSL 4 BASIC16.83■□□□□ 0.28
CDX2Q99626 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.83■□□□□ 0.28
CDX2Q99626 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.83■□□□□ 0.28
CDX2Q99626 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CDX2Q99626 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.83■□□□□ 0.28
CDX2Q99626 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.83■□□□□ 0.28
CDX2Q99626 RN7SL574P-201ENST00000581512 297 ntBASIC16.83■□□□□ 0.28
CDX2Q99626 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.83■□□□□ 0.28
CDX2Q99626 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CDX2Q99626 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CDX2Q99626 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.83■□□□□ 0.28
CDX2Q99626 AC011491.1-203ENST00000637688 543 ntBASIC16.83■□□□□ 0.28
CDX2Q99626 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.82■□□□□ 0.28
CDX2Q99626 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC16.82■□□□□ 0.28
CDX2Q99626 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.82■□□□□ 0.28
CDX2Q99626 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.82■□□□□ 0.28
CDX2Q99626 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
CDX2Q99626 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC16.82■□□□□ 0.28
CDX2Q99626 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC16.82■□□□□ 0.28
CDX2Q99626 SERF2-206ENST00000409291 807 ntTSL 3 BASIC16.82■□□□□ 0.28
CDX2Q99626 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
CDX2Q99626 TOMM22P5-201ENST00000416399 439 ntBASIC16.82■□□□□ 0.28
CDX2Q99626 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.82■□□□□ 0.28
CDX2Q99626 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC16.82■□□□□ 0.28
CDX2Q99626 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC16.82■□□□□ 0.28
CDX2Q99626 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
CDX2Q99626 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC16.82■□□□□ 0.28
CDX2Q99626 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CDX2Q99626 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.82■□□□□ 0.28
CDX2Q99626 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms