Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 TFAMP1-201ENST00000412727 736 ntBASIC12.69□□□□□ -0.38
CCDC140Q96MF4 HTR5BP-201ENST00000430851 1154 ntBASIC12.69□□□□□ -0.38
CCDC140Q96MF4 MKNK2P1-201ENST00000437526 628 ntBASIC12.69□□□□□ -0.38
CCDC140Q96MF4 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 INO80E-210ENST00000567705 880 ntTSL 3 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 PGR-209ENST00000617858 2816 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC140Q96MF4 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 COX10-202ENST00000429152 875 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 ACTG1P14-201ENST00000446382 1122 ntBASIC12.68□□□□□ -0.38
CCDC140Q96MF4 DNAJB3-201ENST00000446806 729 ntBASIC12.68□□□□□ -0.38
CCDC140Q96MF4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms