Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.31■□□□□ 0.2
TTC28Q96AY4 AC138894.2-201ENST00000602838 371 ntBASIC16.31■□□□□ 0.2
TTC28Q96AY4 AC091544.8-201ENST00000619490 361 ntBASIC16.31■□□□□ 0.2
TTC28Q96AY4 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.31■□□□□ 0.2
TTC28Q96AY4 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.31■□□□□ 0.2
TTC28Q96AY4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.31■□□□□ 0.2
TTC28Q96AY4 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.31■□□□□ 0.2
TTC28Q96AY4 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.31■□□□□ 0.2
TTC28Q96AY4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 ACTG1P2-201ENST00000415776 1125 ntBASIC16.3■□□□□ 0.2
TTC28Q96AY4 ACTG1P11-201ENST00000425411 1125 ntBASIC16.3■□□□□ 0.2
TTC28Q96AY4 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TTC28Q96AY4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TTC28Q96AY4 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.29■□□□□ 0.2
TTC28Q96AY4 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.29■□□□□ 0.2
TTC28Q96AY4 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 AL138709.1-201ENST00000614840 1693 ntBASIC16.29■□□□□ 0.2
TTC28Q96AY4 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TTC28Q96AY4 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.29■□□□□ 0.2
TTC28Q96AY4 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 AL357373.1-201ENST00000394974 322 ntBASIC16.29■□□□□ 0.2
TTC28Q96AY4 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
TTC28Q96AY4 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.29■□□□□ 0.2
TTC28Q96AY4 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC16.29■□□□□ 0.2
TTC28Q96AY4 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TTC28Q96AY4 MIR6842-201ENST00000612539 65 ntBASIC16.29■□□□□ 0.2
TTC28Q96AY4 FO393412.1-201ENST00000619841 382 ntBASIC16.29■□□□□ 0.2
TTC28Q96AY4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
TTC28Q96AY4 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.29■□□□□ 0.2
TTC28Q96AY4 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TTC28Q96AY4 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.29■□□□□ 0.2
TTC28Q96AY4 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 EFS-203ENST00000429593 2610 ntTSL 2 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TTC28Q96AY4 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 AC093724.1-201ENST00000448659 1027 ntBASIC16.28■□□□□ 0.2
TTC28Q96AY4 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms