Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 AL121912.1-201ENST00000603683 238 ntBASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ATG4AQ8WYN0 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 AL592424.1-201ENST00000563624 1536 ntBASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 KRT18P67-201ENST00000432816 1264 ntBASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 FAM185BP-201ENST00000443595 716 ntBASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 AC103702.1-201ENST00000548801 2630 ntBASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATG4AQ8WYN0 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 RNU1-129P-201ENST00000384064 167 ntBASIC17.02■□□□□ 0.32
ATG4AQ8WYN0 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms