Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC25.34■■□□□ 1.65
VPS8Q8N3P4 AC114501.2-201ENST00000439631 535 ntBASIC25.34■■□□□ 1.65
VPS8Q8N3P4 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
VPS8Q8N3P4 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC25.34■■□□□ 1.65
VPS8Q8N3P4 STOM-203ENST00000538954 1257 ntTSL 5 BASIC25.34■■□□□ 1.65
VPS8Q8N3P4 SUOX-214ENST00000551841 906 ntTSL 3 BASIC25.34■■□□□ 1.65
VPS8Q8N3P4 HNRNPUP1-201ENST00000554987 333 ntBASIC25.34■■□□□ 1.65
VPS8Q8N3P4 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC25.34■■□□□ 1.65
VPS8Q8N3P4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC25.34■■□□□ 1.65
VPS8Q8N3P4 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC25.34■■□□□ 1.65
VPS8Q8N3P4 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
VPS8Q8N3P4 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC25.34■■□□□ 1.65
VPS8Q8N3P4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC25.34■■□□□ 1.65
VPS8Q8N3P4 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 AC044860.1-202ENST00000559481 777 ntBASIC25.33■■□□□ 1.65
VPS8Q8N3P4 AC104794.3-201ENST00000566840 1248 ntBASIC25.33■■□□□ 1.65
VPS8Q8N3P4 SPIB-207ENST00000597855 564 ntTSL 4 BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 BTBD7P1-201ENST00000447253 1453 ntBASIC25.33■■□□□ 1.65
VPS8Q8N3P4 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 AL596087.1-201ENST00000400979 1969 ntBASIC25.33■■□□□ 1.65
VPS8Q8N3P4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
VPS8Q8N3P4 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 AL118508.1-201ENST00000613502 2345 ntBASIC25.32■■□□□ 1.64
VPS8Q8N3P4 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC25.32■■□□□ 1.64
VPS8Q8N3P4 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 AC092364.2-202ENST00000597012 1073 ntBASIC25.31■■□□□ 1.64
VPS8Q8N3P4 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 AL662844.4-201ENST00000606367 2838 ntBASIC25.31■■□□□ 1.64
VPS8Q8N3P4 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC25.31■■□□□ 1.64
VPS8Q8N3P4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 RASL12-203ENST00000434605 982 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC25.3■■□□□ 1.64
VPS8Q8N3P4 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC25.3■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms