Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 RN7SL774P-201ENST00000577467 290 ntBASIC11.58□□□□□ -0.56
PRKDCP78527 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC11.58□□□□□ -0.56
PRKDCP78527 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC11.58□□□□□ -0.56
PRKDCP78527 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC11.58□□□□□ -0.56
PRKDCP78527 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
PRKDCP78527 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
PRKDCP78527 AC134915.1-201ENST00000426461 574 ntBASIC11.58□□□□□ -0.56
PRKDCP78527 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC11.58□□□□□ -0.56
PRKDCP78527 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC11.58□□□□□ -0.56
PRKDCP78527 AC005730.2-201ENST00000564549 1184 ntBASIC11.58□□□□□ -0.56
PRKDCP78527 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
PRKDCP78527 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC11.58□□□□□ -0.56
PRKDCP78527 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
PRKDCP78527 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC11.58□□□□□ -0.56
PRKDCP78527 TOMM22P5-201ENST00000416399 439 ntBASIC11.58□□□□□ -0.56
PRKDCP78527 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC11.58□□□□□ -0.56
PRKDCP78527 KLK11-210ENST00000600362 759 ntTSL 3 BASIC11.58□□□□□ -0.56
PRKDCP78527 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
PRKDCP78527 AL354751.1-201ENST00000412768 1863 ntBASIC11.57□□□□□ -0.56
PRKDCP78527 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 CYP51A1P3-201ENST00000400072 1428 ntBASIC11.57□□□□□ -0.56
PRKDCP78527 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 TUBBP5-203ENST00000508529 1334 ntBASIC11.57□□□□□ -0.56
PRKDCP78527 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC11.57□□□□□ -0.56
PRKDCP78527 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC11.57□□□□□ -0.56
PRKDCP78527 AC127024.7-201ENST00000625101 200 ntBASIC11.57□□□□□ -0.56
PRKDCP78527 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 BOC-212ENST00000485230 2173 ntTSL 2 BASIC11.57□□□□□ -0.56
PRKDCP78527 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC11.57□□□□□ -0.56
PRKDCP78527 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC11.57□□□□□ -0.56
PRKDCP78527 NAT9-222ENST00000583476 583 ntTSL 3 BASIC11.57□□□□□ -0.56
PRKDCP78527 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC11.57□□□□□ -0.56
PRKDCP78527 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC11.57□□□□□ -0.56
PRKDCP78527 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 KRT8P39-201ENST00000396270 1433 ntBASIC11.57□□□□□ -0.56
PRKDCP78527 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
PRKDCP78527 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC11.57□□□□□ -0.56
PRKDCP78527 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC11.57□□□□□ -0.56
PRKDCP78527 AC133963.1-201ENST00000504166 1679 ntBASIC11.57□□□□□ -0.56
PRKDCP78527 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 FGFR3P1-201ENST00000449999 601 ntBASIC11.57□□□□□ -0.56
PRKDCP78527 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC11.57□□□□□ -0.56
PRKDCP78527 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC11.57□□□□□ -0.56
PRKDCP78527 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC11.57□□□□□ -0.56
PRKDCP78527 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC11.57□□□□□ -0.56
PRKDCP78527 AP003392.6-201ENST00000607709 325 ntBASIC11.57□□□□□ -0.56
PRKDCP78527 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC11.57□□□□□ -0.56
PRKDCP78527 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC11.57□□□□□ -0.56
PRKDCP78527 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC11.57□□□□□ -0.56
PRKDCP78527 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PRKDCP78527 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
PRKDCP78527 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
PRKDCP78527 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC11.56□□□□□ -0.56
PRKDCP78527 DRD5P1-201ENST00000456605 1438 ntBASIC11.56□□□□□ -0.56
PRKDCP78527 AC092053.1-201ENST00000605787 1936 ntBASIC11.56□□□□□ -0.56
PRKDCP78527 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
PRKDCP78527 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC11.56□□□□□ -0.56
PRKDCP78527 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC11.56□□□□□ -0.56
PRKDCP78527 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC11.56□□□□□ -0.56
PRKDCP78527 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC11.56□□□□□ -0.56
PRKDCP78527 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC11.56□□□□□ -0.56
PRKDCP78527 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC11.56□□□□□ -0.56
PRKDCP78527 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC11.56□□□□□ -0.56
PRKDCP78527 FST-202ENST00000396947 2538 ntTSL 5 BASIC11.56□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms