Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RNF4P78317 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.2■□□□□ 0.02
RNF4P78317 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.19■□□□□ 0.02
RNF4P78317 ALOX12P2-203ENST00000570921 1945 ntBASIC15.19■□□□□ 0.02
RNF4P78317 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 AC009053.2-201ENST00000563701 2365 ntBASIC15.19■□□□□ 0.02
RNF4P78317 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.19■□□□□ 0.02
RNF4P78317 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.19■□□□□ 0.02
RNF4P78317 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 POU5F1P6-201ENST00000466990 990 ntBASIC15.19■□□□□ 0.02
RNF4P78317 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RNF4P78317 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.19■□□□□ 0.02
RNF4P78317 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.19■□□□□ 0.02
RNF4P78317 AL512356.2-201ENST00000546955 174 ntBASIC15.19■□□□□ 0.02
RNF4P78317 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.19■□□□□ 0.02
RNF4P78317 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.19■□□□□ 0.02
RNF4P78317 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.19■□□□□ 0.02
RNF4P78317 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RNF4P78317 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.19■□□□□ 0.02
RNF4P78317 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.19■□□□□ 0.02
RNF4P78317 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 AP3S2-216ENST00000617003 1561 ntBASIC15.19■□□□□ 0.02
RNF4P78317 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RNF4P78317 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.19■□□□□ 0.02
RNF4P78317 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.18■□□□□ 0.02
RNF4P78317 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 AC068418.2-201ENST00000577309 3703 ntBASIC15.18■□□□□ 0.02
RNF4P78317 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
RNF4P78317 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
RNF4P78317 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.18■□□□□ 0.02
RNF4P78317 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.18■□□□□ 0.02
RNF4P78317 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.18■□□□□ 0.02
RNF4P78317 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.18■□□□□ 0.02
RNF4P78317 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
RNF4P78317 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.18■□□□□ 0.02
RNF4P78317 SPDYE14P-201ENST00000442619 822 ntBASIC15.18■□□□□ 0.02
RNF4P78317 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.18■□□□□ 0.02
RNF4P78317 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.18■□□□□ 0.02
RNF4P78317 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.18■□□□□ 0.02
RNF4P78317 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
RNF4P78317 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
RNF4P78317 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RNF4P78317 ME2P1-201ENST00000426028 1970 ntBASIC15.18■□□□□ 0.02
RNF4P78317 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.18■□□□□ 0.02
RNF4P78317 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
RNF4P78317 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
RNF4P78317 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.18■□□□□ 0.02
RNF4P78317 AL589702.1-201ENST00000641229 1509 ntBASIC15.17■□□□□ 0.02
RNF4P78317 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms