Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
TPM4P67936 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TPM4P67936 GPAA1P2-202ENST00000606848 1787 ntBASIC18.49■□□□□ 0.55
TPM4P67936 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
TPM4P67936 REXO1L8P-201ENST00000604378 1897 ntBASIC18.49■□□□□ 0.55
TPM4P67936 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TPM4P67936 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TPM4P67936 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
TPM4P67936 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
TPM4P67936 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.49■□□□□ 0.55
TPM4P67936 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.49■□□□□ 0.55
TPM4P67936 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TPM4P67936 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.49■□□□□ 0.55
TPM4P67936 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
TPM4P67936 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
TPM4P67936 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM4P67936 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC18.48■□□□□ 0.55
TPM4P67936 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM4P67936 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM4P67936 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
TPM4P67936 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.48■□□□□ 0.55
TPM4P67936 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM4P67936 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.48■□□□□ 0.55
TPM4P67936 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 TPSP2-201ENST00000561760 610 ntBASIC18.48■□□□□ 0.55
TPM4P67936 AC074051.2-201ENST00000565115 352 ntBASIC18.48■□□□□ 0.55
TPM4P67936 AC091167.2-201ENST00000579581 588 ntBASIC18.48■□□□□ 0.55
TPM4P67936 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
TPM4P67936 OR2I1P-210ENST00000642037 4691 ntBASIC18.48■□□□□ 0.55
TPM4P67936 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC18.48■□□□□ 0.55
TPM4P67936 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TPM4P67936 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
TPM4P67936 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM4P67936 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
TPM4P67936 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.48■□□□□ 0.55
TPM4P67936 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TPM4P67936 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 LINC02447-202ENST00000501888 2146 ntBASIC18.47■□□□□ 0.55
TPM4P67936 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TPM4P67936 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 SLC9A7P1-201ENST00000554295 3311 ntBASIC18.47■□□□□ 0.55
TPM4P67936 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 CDC14C-201ENST00000428251 1719 ntBASIC18.47■□□□□ 0.55
TPM4P67936 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
TPM4P67936 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 IGHV3-47-201ENST00000425060 335 ntBASIC18.47■□□□□ 0.55
TPM4P67936 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.47■□□□□ 0.55
TPM4P67936 PRYP5-201ENST00000451909 266 ntBASIC18.47■□□□□ 0.55
TPM4P67936 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.47■□□□□ 0.55
TPM4P67936 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.47■□□□□ 0.55
TPM4P67936 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
TPM4P67936 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 AC099063.4-201ENST00000641099 1602 ntBASIC18.47■□□□□ 0.55
TPM4P67936 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.47■□□□□ 0.55
TPM4P67936 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.47■□□□□ 0.55
TPM4P67936 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC18.47■□□□□ 0.55
TPM4P67936 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC18.47■□□□□ 0.55
TPM4P67936 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.47■□□□□ 0.55
TPM4P67936 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.47■□□□□ 0.55
TPM4P67936 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
TPM4P67936 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM4P67936 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM4P67936 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM4P67936 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM4P67936 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.46■□□□□ 0.55
TPM4P67936 AC131009.4-201ENST00000624048 1740 ntBASIC18.46■□□□□ 0.55
TPM4P67936 AC022532.1-201ENST00000624563 1728 ntBASIC18.46■□□□□ 0.55
TPM4P67936 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
TPM4P67936 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TPM4P67936 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM4P67936 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.46■□□□□ 0.55
TPM4P67936 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM4P67936 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TPM4P67936 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms