Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC18.9■□□□□ 0.62
CTCFP49711 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
CTCFP49711 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC18.9■□□□□ 0.62
CTCFP49711 AC234644.1-201ENST00000406065 370 ntBASIC18.9■□□□□ 0.62
CTCFP49711 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.9■□□□□ 0.62
CTCFP49711 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC18.9■□□□□ 0.62
CTCFP49711 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.9■□□□□ 0.62
CTCFP49711 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.9■□□□□ 0.62
CTCFP49711 MIR4750-201ENST00000584564 56 ntBASIC18.9■□□□□ 0.62
CTCFP49711 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC18.9■□□□□ 0.62
CTCFP49711 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC18.9■□□□□ 0.62
CTCFP49711 HLA-C-210ENST00000640219 976 ntBASIC18.9■□□□□ 0.62
CTCFP49711 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CTCFP49711 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CTCFP49711 TOP3BP1-201ENST00000420768 1380 ntBASIC18.9■□□□□ 0.62
CTCFP49711 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CTCFP49711 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CTCFP49711 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
CTCFP49711 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CTCFP49711 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
CTCFP49711 LINC00896-202ENST00000609602 2128 ntBASIC18.89■□□□□ 0.62
CTCFP49711 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
CTCFP49711 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CTCFP49711 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CTCFP49711 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.89■□□□□ 0.61
CTCFP49711 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
CTCFP49711 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CTCFP49711 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CTCFP49711 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CTCFP49711 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CTCFP49711 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CTCFP49711 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC18.89■□□□□ 0.61
CTCFP49711 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.89■□□□□ 0.61
CTCFP49711 AL355864.2-201ENST00000447420 863 ntBASIC18.89■□□□□ 0.61
CTCFP49711 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
CTCFP49711 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CTCFP49711 PTP4A1P2-201ENST00000546033 454 ntBASIC18.89■□□□□ 0.61
CTCFP49711 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC18.89■□□□□ 0.61
CTCFP49711 AL008638.5-201ENST00000623814 1298 ntBASIC18.89■□□□□ 0.61
CTCFP49711 GRN-222ENST00000639447 1314 ntTSL 2 BASIC18.89■□□□□ 0.61
CTCFP49711 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CTCFP49711 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.89■□□□□ 0.61
CTCFP49711 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.89■□□□□ 0.61
CTCFP49711 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.89■□□□□ 0.61
CTCFP49711 LINC00895-201ENST00000629028 1637 ntBASIC18.89■□□□□ 0.61
CTCFP49711 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CTCFP49711 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
CTCFP49711 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
CTCFP49711 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.88■□□□□ 0.61
CTCFP49711 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC18.88■□□□□ 0.61
CTCFP49711 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC18.88■□□□□ 0.61
CTCFP49711 AC026954.1-201ENST00000429771 1293 ntBASIC18.88■□□□□ 0.61
CTCFP49711 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC18.88■□□□□ 0.61
CTCFP49711 RN7SL818P-201ENST00000485099 259 ntBASIC18.88■□□□□ 0.61
CTCFP49711 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC18.88■□□□□ 0.61
CTCFP49711 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC18.88■□□□□ 0.61
CTCFP49711 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.88■□□□□ 0.61
CTCFP49711 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC18.88■□□□□ 0.61
CTCFP49711 AC020914.3-201ENST00000594712 304 ntBASIC18.88■□□□□ 0.61
CTCFP49711 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.88■□□□□ 0.61
CTCFP49711 RN7SL725P-201ENST00000606439 259 ntBASIC18.88■□□□□ 0.61
CTCFP49711 PRKN-211ENST00000615065 261 ntTSL 5 BASIC18.88■□□□□ 0.61
CTCFP49711 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.88■□□□□ 0.61
CTCFP49711 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC18.88■□□□□ 0.61
CTCFP49711 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC18.88■□□□□ 0.61
CTCFP49711 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.88■□□□□ 0.61
CTCFP49711 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC18.88■□□□□ 0.61
CTCFP49711 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CTCFP49711 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.88■□□□□ 0.61
CTCFP49711 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.88■□□□□ 0.61
CTCFP49711 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.88■□□□□ 0.61
CTCFP49711 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTCFP49711 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CTCFP49711 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms