Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
HOXA1P49639 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
HOXA1P49639 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.71□□□□□ -0.21
HOXA1P49639 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.71□□□□□ -0.21
HOXA1P49639 AC107918.4-201ENST00000641966 3141 ntBASIC13.71□□□□□ -0.21
HOXA1P49639 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 AC013268.4-201ENST00000637413 2228 ntBASIC13.71□□□□□ -0.21
HOXA1P49639 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC13.71□□□□□ -0.21
HOXA1P49639 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC13.71□□□□□ -0.21
HOXA1P49639 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC13.71□□□□□ -0.21
HOXA1P49639 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC13.71□□□□□ -0.21
HOXA1P49639 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
HOXA1P49639 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
HOXA1P49639 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC13.71□□□□□ -0.21
HOXA1P49639 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC13.71□□□□□ -0.21
HOXA1P49639 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC13.71□□□□□ -0.21
HOXA1P49639 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC13.71□□□□□ -0.21
HOXA1P49639 DANCR-204ENST00000444958 709 ntTSL 3 BASIC13.71□□□□□ -0.21
HOXA1P49639 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC13.71□□□□□ -0.21
HOXA1P49639 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
HOXA1P49639 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC13.71□□□□□ -0.21
HOXA1P49639 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXA1P49639 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.71□□□□□ -0.21
HOXA1P49639 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
HOXA1P49639 AC009090.5-201ENST00000624886 2285 ntBASIC13.71□□□□□ -0.21
HOXA1P49639 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXA1P49639 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
HOXA1P49639 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
HOXA1P49639 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXA1P49639 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXA1P49639 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
HOXA1P49639 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXA1P49639 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
HOXA1P49639 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
HOXA1P49639 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
HOXA1P49639 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
HOXA1P49639 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXA1P49639 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
HOXA1P49639 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXA1P49639 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXA1P49639 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC13.7□□□□□ -0.22
HOXA1P49639 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC13.7□□□□□ -0.22
HOXA1P49639 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
HOXA1P49639 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXA1P49639 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.7□□□□□ -0.22
HOXA1P49639 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
HOXA1P49639 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
HOXA1P49639 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
HOXA1P49639 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC13.7□□□□□ -0.22
HOXA1P49639 AC246785.2-201ENST00000432512 513 ntBASIC13.7□□□□□ -0.22
HOXA1P49639 AC022616.7-201ENST00000525383 220 ntBASIC13.7□□□□□ -0.22
HOXA1P49639 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 AC011498.5-201ENST00000592027 486 ntBASIC13.7□□□□□ -0.22
HOXA1P49639 AL353801.3-201ENST00000609898 542 ntBASIC13.7□□□□□ -0.22
HOXA1P49639 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXA1P49639 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
HOXA1P49639 AC073592.5-201ENST00000624854 528 ntBASIC13.7□□□□□ -0.22
HOXA1P49639 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
HOXA1P49639 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms