Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.65■□□□□ 0.26
HADHAP40939 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.65■□□□□ 0.26
HADHAP40939 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.65■□□□□ 0.26
HADHAP40939 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.65■□□□□ 0.26
HADHAP40939 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HADHAP40939 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.65■□□□□ 0.26
HADHAP40939 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HADHAP40939 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 LINC01144-201ENST00000626198 1710 ntBASIC16.65■□□□□ 0.26
HADHAP40939 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 MIR574-201ENST00000385209 96 ntBASIC16.65■□□□□ 0.26
HADHAP40939 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HADHAP40939 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.65■□□□□ 0.26
HADHAP40939 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.65■□□□□ 0.26
HADHAP40939 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 KRT18P3-201ENST00000451602 1288 ntBASIC16.65■□□□□ 0.26
HADHAP40939 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.65■□□□□ 0.26
HADHAP40939 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
HADHAP40939 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.65■□□□□ 0.26
HADHAP40939 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HADHAP40939 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.65■□□□□ 0.26
HADHAP40939 AC140113.2-201ENST00000604370 208 ntBASIC16.65■□□□□ 0.26
HADHAP40939 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.65■□□□□ 0.26
HADHAP40939 AC023511.2-201ENST00000618803 211 ntBASIC16.65■□□□□ 0.26
HADHAP40939 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.65■□□□□ 0.26
HADHAP40939 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HADHAP40939 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HADHAP40939 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HADHAP40939 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HADHAP40939 GGT4P-201ENST00000623672 1708 ntBASIC16.65■□□□□ 0.26
HADHAP40939 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
HADHAP40939 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
HADHAP40939 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.64■□□□□ 0.26
HADHAP40939 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.64■□□□□ 0.25
HADHAP40939 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 AL596087.1-201ENST00000400979 1969 ntBASIC16.64■□□□□ 0.25
HADHAP40939 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 AC025580.3-201ENST00000617932 1424 ntBASIC16.64■□□□□ 0.25
HADHAP40939 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.64■□□□□ 0.25
HADHAP40939 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
HADHAP40939 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
HADHAP40939 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
HADHAP40939 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.64■□□□□ 0.25
HADHAP40939 KRT18P2-201ENST00000447938 1258 ntBASIC16.64■□□□□ 0.25
HADHAP40939 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.64■□□□□ 0.25
HADHAP40939 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.64■□□□□ 0.25
HADHAP40939 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.64■□□□□ 0.25
HADHAP40939 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.64■□□□□ 0.25
HADHAP40939 KRT18P58-201ENST00000527480 1120 ntBASIC16.64■□□□□ 0.25
HADHAP40939 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
HADHAP40939 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
HADHAP40939 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.64■□□□□ 0.25
HADHAP40939 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.64■□□□□ 0.25
HADHAP40939 AC018845.2-201ENST00000568326 409 ntBASIC16.64■□□□□ 0.25
HADHAP40939 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
HADHAP40939 AC020765.3-201ENST00000613051 740 ntBASIC16.64■□□□□ 0.25
HADHAP40939 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.64■□□□□ 0.25
HADHAP40939 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
HADHAP40939 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 AC063926.3-201ENST00000624734 5658 ntBASIC16.64■□□□□ 0.25
HADHAP40939 LINC02199-201ENST00000506655 2702 ntBASIC16.64■□□□□ 0.25
HADHAP40939 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.64■□□□□ 0.25
HADHAP40939 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.64■□□□□ 0.25
HADHAP40939 GPAA1P2-202ENST00000606848 1787 ntBASIC16.64■□□□□ 0.25
HADHAP40939 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HADHAP40939 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.64■□□□□ 0.25
HADHAP40939 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.63■□□□□ 0.25
HADHAP40939 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HADHAP40939 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HADHAP40939 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.63■□□□□ 0.25
HADHAP40939 AC007950.2-201ENST00000615045 2347 ntBASIC16.63■□□□□ 0.25
HADHAP40939 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms