Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RPA3P35244 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RPA3P35244 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RPA3P35244 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
RPA3P35244 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
RPA3P35244 AP002414.2-201ENST00000591780 3365 ntBASIC16.66■□□□□ 0.26
RPA3P35244 LINC02447-202ENST00000501888 2146 ntBASIC16.66■□□□□ 0.26
RPA3P35244 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
RPA3P35244 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.65■□□□□ 0.26
RPA3P35244 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
RPA3P35244 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
RPA3P35244 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.65■□□□□ 0.26
RPA3P35244 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.65■□□□□ 0.26
RPA3P35244 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.65■□□□□ 0.26
RPA3P35244 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
RPA3P35244 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.65■□□□□ 0.26
RPA3P35244 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.65■□□□□ 0.26
RPA3P35244 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.65■□□□□ 0.26
RPA3P35244 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.65■□□□□ 0.26
RPA3P35244 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
RPA3P35244 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.65■□□□□ 0.26
RPA3P35244 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.65■□□□□ 0.26
RPA3P35244 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.65■□□□□ 0.26
RPA3P35244 AC004706.3-202ENST00000621574 984 ntBASIC16.65■□□□□ 0.26
RPA3P35244 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 AL590787.1-201ENST00000568856 1315 ntBASIC16.65■□□□□ 0.26
RPA3P35244 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
RPA3P35244 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RPA3P35244 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.65■□□□□ 0.26
RPA3P35244 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
RPA3P35244 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
RPA3P35244 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.64■□□□□ 0.25
RPA3P35244 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.64■□□□□ 0.25
RPA3P35244 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.64■□□□□ 0.25
RPA3P35244 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.64■□□□□ 0.25
RPA3P35244 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.64■□□□□ 0.25
RPA3P35244 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
RPA3P35244 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 MRPL3P1-201ENST00000400109 1033 ntBASIC16.64■□□□□ 0.25
RPA3P35244 HNRNPDP1-201ENST00000439535 754 ntBASIC16.64■□□□□ 0.25
RPA3P35244 AC009078.2-202ENST00000463353 338 ntBASIC16.64■□□□□ 0.25
RPA3P35244 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.64■□□□□ 0.25
RPA3P35244 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.64■□□□□ 0.25
RPA3P35244 AC093909.1-201ENST00000504731 1122 ntBASIC16.64■□□□□ 0.25
RPA3P35244 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.64■□□□□ 0.25
RPA3P35244 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.64■□□□□ 0.25
RPA3P35244 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.64■□□□□ 0.25
RPA3P35244 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.64■□□□□ 0.25
RPA3P35244 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
RPA3P35244 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
RPA3P35244 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
RPA3P35244 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.64■□□□□ 0.25
RPA3P35244 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.64■□□□□ 0.25
RPA3P35244 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
RPA3P35244 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 AL136379.1-201ENST00000623471 2642 ntBASIC16.64■□□□□ 0.25
RPA3P35244 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RPA3P35244 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
RPA3P35244 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.63■□□□□ 0.25
RPA3P35244 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.63■□□□□ 0.25
RPA3P35244 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.63■□□□□ 0.25
RPA3P35244 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.63■□□□□ 0.25
RPA3P35244 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.63■□□□□ 0.25
RPA3P35244 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.63■□□□□ 0.25
RPA3P35244 AL031284.1-201ENST00000419297 478 ntBASIC16.63■□□□□ 0.25
RPA3P35244 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RPA3P35244 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms