Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.41■□□□□ 0.54
CIITAP33076 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CIITAP33076 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CIITAP33076 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
CIITAP33076 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CIITAP33076 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.41■□□□□ 0.54
CIITAP33076 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
CIITAP33076 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.41■□□□□ 0.54
CIITAP33076 LITAF-210ENST00000571976 548 ntTSL 2 BASIC18.41■□□□□ 0.54
CIITAP33076 LITAF-214ENST00000574703 486 ntTSL 2 BASIC18.41■□□□□ 0.54
CIITAP33076 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.41■□□□□ 0.54
CIITAP33076 AL133215.2-201ENST00000609242 977 ntBASIC18.41■□□□□ 0.54
CIITAP33076 AC106028.4-201ENST00000614509 607 ntBASIC18.41■□□□□ 0.54
CIITAP33076 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.41■□□□□ 0.54
CIITAP33076 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CIITAP33076 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CIITAP33076 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.41■□□□□ 0.54
CIITAP33076 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.41■□□□□ 0.54
CIITAP33076 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.41■□□□□ 0.54
CIITAP33076 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.41■□□□□ 0.54
CIITAP33076 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CIITAP33076 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CIITAP33076 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CIITAP33076 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CIITAP33076 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.4■□□□□ 0.54
CIITAP33076 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CIITAP33076 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.4■□□□□ 0.54
CIITAP33076 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.4■□□□□ 0.54
CIITAP33076 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.4■□□□□ 0.54
CIITAP33076 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CIITAP33076 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.4■□□□□ 0.54
CIITAP33076 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.4■□□□□ 0.54
CIITAP33076 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.4■□□□□ 0.54
CIITAP33076 AC107890.1-201ENST00000422478 521 ntBASIC18.4■□□□□ 0.54
CIITAP33076 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.4■□□□□ 0.54
CIITAP33076 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.4■□□□□ 0.54
CIITAP33076 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 AC125807.1-201ENST00000483097 614 ntBASIC18.4■□□□□ 0.54
CIITAP33076 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.4■□□□□ 0.54
CIITAP33076 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 DUX4L27-201ENST00000554796 1261 ntBASIC18.4■□□□□ 0.54
CIITAP33076 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.4■□□□□ 0.54
CIITAP33076 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.4■□□□□ 0.54
CIITAP33076 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 AC093512.1-201ENST00000617969 520 ntBASIC18.4■□□□□ 0.54
CIITAP33076 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.4■□□□□ 0.54
CIITAP33076 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.4■□□□□ 0.54
CIITAP33076 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CIITAP33076 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
CIITAP33076 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
CIITAP33076 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
CIITAP33076 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CIITAP33076 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.4■□□□□ 0.54
CIITAP33076 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CIITAP33076 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CIITAP33076 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.39■□□□□ 0.54
CIITAP33076 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.39■□□□□ 0.54
CIITAP33076 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CIITAP33076 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
CIITAP33076 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CIITAP33076 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
CIITAP33076 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.39■□□□□ 0.53
CIITAP33076 MTHFR-217ENST00000641820 1569 ntBASIC18.39■□□□□ 0.53
CIITAP33076 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.39■□□□□ 0.53
CIITAP33076 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.39■□□□□ 0.53
CIITAP33076 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.39■□□□□ 0.53
CIITAP33076 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.39■□□□□ 0.53
CIITAP33076 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.39■□□□□ 0.53
CIITAP33076 RN7SL828P-201ENST00000607615 303 ntBASIC18.39■□□□□ 0.53
CIITAP33076 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.39■□□□□ 0.53
CIITAP33076 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms