Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.26■□□□□ 0.83
COL5A3P25940 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A3P25940 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A3P25940 CNN2P8-201ENST00000421872 913 ntBASIC20.25■□□□□ 0.83
COL5A3P25940 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
COL5A3P25940 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC20.25■□□□□ 0.83
COL5A3P25940 AC006033.1-201ENST00000440505 426 ntBASIC20.25■□□□□ 0.83
COL5A3P25940 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC20.25■□□□□ 0.83
COL5A3P25940 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC20.25■□□□□ 0.83
COL5A3P25940 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC20.25■□□□□ 0.83
COL5A3P25940 AC079316.1-201ENST00000548397 411 ntBASIC20.25■□□□□ 0.83
COL5A3P25940 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC20.25■□□□□ 0.83
COL5A3P25940 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC20.25■□□□□ 0.83
COL5A3P25940 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.25■□□□□ 0.83
COL5A3P25940 AL121723.1-201ENST00000445194 1519 ntBASIC20.25■□□□□ 0.83
COL5A3P25940 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A3P25940 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A3P25940 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.25■□□□□ 0.83
COL5A3P25940 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A3P25940 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A3P25940 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
COL5A3P25940 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A3P25940 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A3P25940 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL5A3P25940 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC20.24■□□□□ 0.83
COL5A3P25940 RPL13AP20-201ENST00000459725 609 ntBASIC20.24■□□□□ 0.83
COL5A3P25940 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC20.24■□□□□ 0.83
COL5A3P25940 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC20.24■□□□□ 0.83
COL5A3P25940 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC20.24■□□□□ 0.83
COL5A3P25940 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC20.24■□□□□ 0.83
COL5A3P25940 ABBA01031663.1-201ENST00000635630 790 ntBASIC20.24■□□□□ 0.83
COL5A3P25940 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC20.24■□□□□ 0.83
COL5A3P25940 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC20.24■□□□□ 0.83
COL5A3P25940 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC20.24■□□□□ 0.83
COL5A3P25940 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC20.24■□□□□ 0.83
COL5A3P25940 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
COL5A3P25940 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
COL5A3P25940 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC20.24■□□□□ 0.83
COL5A3P25940 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL5A3P25940 ZBTB45P2-201ENST00000452245 1531 ntBASIC20.24■□□□□ 0.83
COL5A3P25940 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 ZBTB12BP-201ENST00000314232 1122 ntBASIC20.24■□□□□ 0.83
COL5A3P25940 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC20.24■□□□□ 0.83
COL5A3P25940 AC007969.1-201ENST00000433675 447 ntBASIC20.24■□□□□ 0.83
COL5A3P25940 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC20.24■□□□□ 0.83
COL5A3P25940 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 AC105020.1-201ENST00000435356 2205 ntBASIC20.24■□□□□ 0.83
COL5A3P25940 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC20.24■□□□□ 0.83
COL5A3P25940 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
COL5A3P25940 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
COL5A3P25940 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A3P25940 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
COL5A3P25940 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
COL5A3P25940 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
COL5A3P25940 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC20.23■□□□□ 0.83
COL5A3P25940 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.23■□□□□ 0.83
COL5A3P25940 GOLGA2P4-201ENST00000441462 777 ntBASIC20.23■□□□□ 0.83
COL5A3P25940 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
COL5A3P25940 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC20.23■□□□□ 0.83
COL5A3P25940 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC20.23■□□□□ 0.83
COL5A3P25940 AC010328.2-201ENST00000597698 1111 ntBASIC20.23■□□□□ 0.83
COL5A3P25940 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC20.23■□□□□ 0.83
COL5A3P25940 AC009053.2-201ENST00000563701 2365 ntBASIC20.23■□□□□ 0.83
COL5A3P25940 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC20.23■□□□□ 0.83
COL5A3P25940 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A3P25940 AGER-206ENST00000375070 1463 ntTSL 5 BASIC20.23■□□□□ 0.83
COL5A3P25940 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A3P25940 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A3P25940 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A3P25940 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A3P25940 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.23■□□□□ 0.83
COL5A3P25940 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
COL5A3P25940 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A3P25940 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC20.22■□□□□ 0.83
COL5A3P25940 AC016694.1-201ENST00000434179 700 ntBASIC20.22■□□□□ 0.83
COL5A3P25940 YBX1P6-201ENST00000442962 1002 ntBASIC20.22■□□□□ 0.83
COL5A3P25940 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC20.22■□□□□ 0.83
COL5A3P25940 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
COL5A3P25940 ENPP7P5-201ENST00000541031 1031 ntBASIC20.22■□□□□ 0.83
COL5A3P25940 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC20.22■□□□□ 0.83
COL5A3P25940 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC20.22■□□□□ 0.83
COL5A3P25940 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC20.22■□□□□ 0.83
COL5A3P25940 LOX-206ENST00000639739 1626 ntTSL 5 BASIC20.22■□□□□ 0.83
COL5A3P25940 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
COL5A3P25940 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL5A3P25940 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms