Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.88■□□□□ 0.45
RFX1P22670 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
RFX1P22670 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.88■□□□□ 0.45
RFX1P22670 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.88■□□□□ 0.45
RFX1P22670 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.88■□□□□ 0.45
RFX1P22670 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RFX1P22670 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RFX1P22670 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.88■□□□□ 0.45
RFX1P22670 AC093214.1-201ENST00000511688 1107 ntBASIC17.88■□□□□ 0.45
RFX1P22670 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RFX1P22670 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.88■□□□□ 0.45
RFX1P22670 LINC00628-201ENST00000628516 1289 ntBASIC17.88■□□□□ 0.45
RFX1P22670 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.88■□□□□ 0.45
RFX1P22670 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX1P22670 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX1P22670 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX1P22670 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
RFX1P22670 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RFX1P22670 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.88■□□□□ 0.45
RFX1P22670 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
RFX1P22670 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RFX1P22670 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RFX1P22670 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RFX1P22670 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX1P22670 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX1P22670 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.87■□□□□ 0.45
RFX1P22670 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
RFX1P22670 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
RFX1P22670 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.87■□□□□ 0.45
RFX1P22670 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.87■□□□□ 0.45
RFX1P22670 AC018695.7-201ENST00000624587 2492 ntBASIC17.87■□□□□ 0.45
RFX1P22670 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.87■□□□□ 0.45
RFX1P22670 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.87■□□□□ 0.45
RFX1P22670 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 RNU1-129P-201ENST00000384064 167 ntBASIC17.87■□□□□ 0.45
RFX1P22670 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 AC023141.5-201ENST00000458585 616 ntBASIC17.87■□□□□ 0.45
RFX1P22670 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.87■□□□□ 0.45
RFX1P22670 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.87■□□□□ 0.45
RFX1P22670 U1.21-201ENST00000580816 167 ntBASIC17.87■□□□□ 0.45
RFX1P22670 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.87■□□□□ 0.45
RFX1P22670 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.87■□□□□ 0.45
RFX1P22670 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
RFX1P22670 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.87■□□□□ 0.45
RFX1P22670 AC006449.6-201ENST00000612330 2296 ntBASIC17.87■□□□□ 0.45
RFX1P22670 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.87■□□□□ 0.45
RFX1P22670 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.87■□□□□ 0.45
RFX1P22670 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
RFX1P22670 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
RFX1P22670 AC022188.1-201ENST00000620960 1664 ntBASIC17.87■□□□□ 0.45
RFX1P22670 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX1P22670 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.86■□□□□ 0.45
RFX1P22670 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.86■□□□□ 0.45
RFX1P22670 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
RFX1P22670 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
RFX1P22670 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.86■□□□□ 0.45
RFX1P22670 AC004461.1-201ENST00000412461 403 ntBASIC17.86■□□□□ 0.45
RFX1P22670 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.86■□□□□ 0.45
RFX1P22670 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.86■□□□□ 0.45
RFX1P22670 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
RFX1P22670 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.86■□□□□ 0.45
RFX1P22670 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.86■□□□□ 0.45
RFX1P22670 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
RFX1P22670 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.86■□□□□ 0.45
RFX1P22670 AC068137.2-201ENST00000605408 478 ntBASIC17.86■□□□□ 0.45
RFX1P22670 AL035252.4-201ENST00000624174 288 ntBASIC17.86■□□□□ 0.45
RFX1P22670 AL513210.1-201ENST00000629608 234 ntBASIC17.86■□□□□ 0.45
RFX1P22670 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
RFX1P22670 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX1P22670 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms