Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGB1P09429 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.35■□□□□ 0.69
HMGB1P09429 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGB1P09429 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGB1P09429 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
HMGB1P09429 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGB1P09429 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.35■□□□□ 0.69
HMGB1P09429 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGB1P09429 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.34■□□□□ 0.69
HMGB1P09429 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.34■□□□□ 0.69
HMGB1P09429 AL365203.3-201ENST00000609742 2057 ntBASIC19.34■□□□□ 0.69
HMGB1P09429 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
HMGB1P09429 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
HMGB1P09429 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.34■□□□□ 0.69
HMGB1P09429 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
HMGB1P09429 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.34■□□□□ 0.69
HMGB1P09429 AL355306.1-201ENST00000415580 579 ntBASIC19.34■□□□□ 0.69
HMGB1P09429 AL671277.1-201ENST00000429656 993 ntBASIC19.34■□□□□ 0.69
HMGB1P09429 ACTG1P14-201ENST00000446382 1122 ntBASIC19.34■□□□□ 0.69
HMGB1P09429 AC245100.5-201ENST00000452108 331 ntBASIC19.34■□□□□ 0.69
HMGB1P09429 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.34■□□□□ 0.69
HMGB1P09429 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC19.34■□□□□ 0.69
HMGB1P09429 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGB1P09429 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.34■□□□□ 0.69
HMGB1P09429 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
HMGB1P09429 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
HMGB1P09429 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HMGB1P09429 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.33■□□□□ 0.69
HMGB1P09429 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HMGB1P09429 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HMGB1P09429 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HMGB1P09429 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.69
HMGB1P09429 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
HMGB1P09429 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.33■□□□□ 0.69
HMGB1P09429 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.33■□□□□ 0.69
HMGB1P09429 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
HMGB1P09429 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.33■□□□□ 0.69
HMGB1P09429 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
HMGB1P09429 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB1P09429 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB1P09429 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC19.33■□□□□ 0.68
HMGB1P09429 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.33■□□□□ 0.68
HMGB1P09429 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.33■□□□□ 0.68
HMGB1P09429 FAM58CP-201ENST00000435741 640 ntBASIC19.33■□□□□ 0.68
HMGB1P09429 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB1P09429 RN7SL589P-201ENST00000481268 310 ntBASIC19.33■□□□□ 0.68
HMGB1P09429 POLD2P1-201ENST00000511220 997 ntBASIC19.33■□□□□ 0.68
HMGB1P09429 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.33■□□□□ 0.68
HMGB1P09429 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB1P09429 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB1P09429 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.33■□□□□ 0.68
HMGB1P09429 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.33■□□□□ 0.68
HMGB1P09429 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.33■□□□□ 0.68
HMGB1P09429 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
HMGB1P09429 MTDHP5-201ENST00000598980 586 ntBASIC19.33■□□□□ 0.68
HMGB1P09429 C20orf181-201ENST00000623918 480 ntBASIC19.33■□□□□ 0.68
HMGB1P09429 AC092902.6-201ENST00000641783 218 ntBASIC19.33■□□□□ 0.68
HMGB1P09429 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB1P09429 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.68
HMGB1P09429 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.33■□□□□ 0.68
HMGB1P09429 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
HMGB1P09429 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.33■□□□□ 0.68
HMGB1P09429 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB1P09429 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC19.33■□□□□ 0.68
HMGB1P09429 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
HMGB1P09429 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HMGB1P09429 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 AC024909.3-201ENST00000611513 2257 ntBASIC19.32■□□□□ 0.68
HMGB1P09429 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGB1P09429 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGB1P09429 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB1P09429 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms