Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC21.39■■□□□ 1.02
COL3A1P02461 FTH1-202ENST00000526640 786 ntTSL 2 BASIC21.39■■□□□ 1.02
COL3A1P02461 AC190387.1-201ENST00000551683 408 ntBASIC21.39■■□□□ 1.02
COL3A1P02461 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL3A1P02461 LINC01115-203ENST00000606068 577 ntBASIC21.39■■□□□ 1.02
COL3A1P02461 AC074044.1-201ENST00000609673 707 ntBASIC21.39■■□□□ 1.02
COL3A1P02461 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL3A1P02461 AC004461.2-201ENST00000629517 803 ntBASIC21.39■■□□□ 1.02
COL3A1P02461 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC21.39■■□□□ 1.02
COL3A1P02461 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL3A1P02461 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.02
COL3A1P02461 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
COL3A1P02461 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL3A1P02461 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
COL3A1P02461 AL118508.1-201ENST00000613502 2345 ntBASIC21.39■■□□□ 1.02
COL3A1P02461 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL3A1P02461 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL3A1P02461 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL3A1P02461 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL3A1P02461 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL3A1P02461 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC21.39■■□□□ 1.01
COL3A1P02461 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL3A1P02461 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL3A1P02461 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
COL3A1P02461 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL3A1P02461 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC21.39■■□□□ 1.01
COL3A1P02461 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL3A1P02461 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC21.39■■□□□ 1.01
COL3A1P02461 AC136604.1-201ENST00000418535 575 ntBASIC21.39■■□□□ 1.01
COL3A1P02461 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC21.39■■□□□ 1.01
COL3A1P02461 AC097359.3-201ENST00000603982 1210 ntBASIC21.39■■□□□ 1.01
COL3A1P02461 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC21.39■■□□□ 1.01
COL3A1P02461 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL3A1P02461 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC21.38■■□□□ 1.01
COL3A1P02461 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL3A1P02461 GRN-214ENST00000589265 1632 ntTSL 5 BASIC21.38■■□□□ 1.01
COL3A1P02461 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
COL3A1P02461 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC21.38■■□□□ 1.01
COL3A1P02461 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL3A1P02461 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL3A1P02461 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL3A1P02461 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.38■■□□□ 1.01
COL3A1P02461 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL3A1P02461 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL3A1P02461 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC21.38■■□□□ 1.01
COL3A1P02461 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL3A1P02461 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL3A1P02461 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC21.38■■□□□ 1.01
COL3A1P02461 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL3A1P02461 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC21.38■■□□□ 1.01
COL3A1P02461 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC21.38■■□□□ 1.01
COL3A1P02461 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
COL3A1P02461 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC21.38■■□□□ 1.01
COL3A1P02461 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC21.38■■□□□ 1.01
COL3A1P02461 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
COL3A1P02461 EHF-205ENST00000527935 557 ntTSL 2 BASIC21.38■■□□□ 1.01
COL3A1P02461 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC21.38■■□□□ 1.01
COL3A1P02461 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC21.38■■□□□ 1.01
COL3A1P02461 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC21.38■■□□□ 1.01
COL3A1P02461 AC135586.1-201ENST00000539323 574 ntBASIC21.38■■□□□ 1.01
COL3A1P02461 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC21.38■■□□□ 1.01
COL3A1P02461 AL132655.2-201ENST00000596276 594 ntBASIC21.38■■□□□ 1.01
COL3A1P02461 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL3A1P02461 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC21.38■■□□□ 1.01
COL3A1P02461 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC21.37■■□□□ 1.01
COL3A1P02461 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL3A1P02461 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL3A1P02461 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC21.37■■□□□ 1.01
COL3A1P02461 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC21.37■■□□□ 1.01
COL3A1P02461 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL3A1P02461 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC21.37■■□□□ 1.01
COL3A1P02461 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC21.37■■□□□ 1.01
COL3A1P02461 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL3A1P02461 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC21.37■■□□□ 1.01
COL3A1P02461 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL3A1P02461 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC21.37■■□□□ 1.01
COL3A1P02461 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC21.37■■□□□ 1.01
COL3A1P02461 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC21.37■■□□□ 1.01
COL3A1P02461 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC21.37■■□□□ 1.01
COL3A1P02461 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL3A1P02461 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
COL3A1P02461 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC21.37■■□□□ 1.01
COL3A1P02461 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL3A1P02461 FO393414.2-201ENST00000405153 598 ntBASIC21.37■■□□□ 1.01
COL3A1P02461 NME4-207ENST00000450036 985 ntTSL 3 BASIC21.37■■□□□ 1.01
COL3A1P02461 TERF1P3-201ENST00000505638 1227 ntBASIC21.37■■□□□ 1.01
COL3A1P02461 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC21.37■■□□□ 1.01
COL3A1P02461 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC21.37■■□□□ 1.01
COL3A1P02461 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL3A1P02461 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
COL3A1P02461 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC21.37■■□□□ 1.01
COL3A1P02461 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC21.37■■□□□ 1.01
COL3A1P02461 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC21.37■■□□□ 1.01
COL3A1P02461 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL3A1P02461 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC21.36■■□□□ 1.01
COL3A1P02461 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC21.36■■□□□ 1.01
COL3A1P02461 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC21.36■■□□□ 1.01
COL3A1P02461 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL3A1P02461 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL3A1P02461 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms