Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 AL133466.1-201ENST00000447582 150 ntBASIC12.5□□□□□ -0.41
COL6A5A8TX70 AC234782.1-201ENST00000451950 919 ntBASIC12.5□□□□□ -0.41
COL6A5A8TX70 PPOX-204ENST00000462866 473 ntTSL 5 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 PLS3-210ENST00000626746 216 ntTSL 4 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 AC073130.3-201ENST00000624389 2278 ntBASIC12.5□□□□□ -0.41
COL6A5A8TX70 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 FOS-208ENST00000555686 1496 ntTSL 2 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 FO393414.2-201ENST00000405153 598 ntBASIC12.49□□□□□ -0.41
COL6A5A8TX70 HSPB1P2-201ENST00000448722 546 ntBASIC12.49□□□□□ -0.41
COL6A5A8TX70 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 USP49-202ENST00000373010 2446 ntTSL 5 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 WIZP1-201ENST00000531444 2299 ntBASIC12.49□□□□□ -0.41
COL6A5A8TX70 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 AC108860.2-201ENST00000562760 2183 ntBASIC12.49□□□□□ -0.41
COL6A5A8TX70 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 RN7SL8P-201ENST00000461771 266 ntBASIC12.49□□□□□ -0.41
COL6A5A8TX70 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 RN7SL774P-201ENST00000577467 290 ntBASIC12.49□□□□□ -0.41
COL6A5A8TX70 AP001065.2-201ENST00000617205 644 ntBASIC12.49□□□□□ -0.41
COL6A5A8TX70 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC12.49□□□□□ -0.41
COL6A5A8TX70 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 AC012317.2-201ENST00000623305 2251 ntBASIC12.49□□□□□ -0.41
COL6A5A8TX70 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL6A5A8TX70 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 TUBBP5-203ENST00000508529 1334 ntBASIC12.48□□□□□ -0.41
COL6A5A8TX70 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 CD8B2-202ENST00000417670 633 ntBASIC12.48□□□□□ -0.41
COL6A5A8TX70 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 KSR1-207ENST00000578981 748 ntTSL 4 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL6A5A8TX70 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC12.48□□□□□ -0.41
COL6A5A8TX70 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms