Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 PMS2P4-201ENST00000412466 1052 ntBASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 VN2R19P-201ENST00000442399 1052 ntBASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 RNA5SP419-201ENST00000515908 135 ntBASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 TCAP-202ENST00000578283 583 ntTSL 5 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 AC116407.3-201ENST00000623905 1129 ntBASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 AL603832.2-201ENST00000566195 2125 ntBASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 AC024909.3-201ENST00000611513 2257 ntBASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 CSF3-203ENST00000394148 622 ntTSL 3 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 AC009947.1-201ENST00000444350 727 ntBASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 AL513480.1-201ENST00000451731 511 ntBASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 AC093909.1-201ENST00000504731 1122 ntBASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 UNC93B6-202ENST00000528242 690 ntBASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HIF3AQ9Y2N7 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.85□□□□□ -0.03
HIF3AQ9Y2N7 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.85□□□□□ -0.03
HIF3AQ9Y2N7 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.85□□□□□ -0.03
HIF3AQ9Y2N7 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HIF3AQ9Y2N7 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HIF3AQ9Y2N7 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HIF3AQ9Y2N7 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
HIF3AQ9Y2N7 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.85□□□□□ -0.03
HIF3AQ9Y2N7 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms