Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 HLA-H-201ENST00000383620 1096 ntBASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 UGT1A2P-201ENST00000454886 866 ntBASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 PRYP6-201ENST00000514804 343 ntBASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 AC003101.2-201ENST00000612557 442 ntBASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SSX2IPQ9Y2D8 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 AC009118.2-201ENST00000613275 655 ntBASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 AL358472.5-202ENST00000641448 1267 ntBASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 AL023806.1-201ENST00000603994 1649 ntBASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSX2IPQ9Y2D8 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.66■□□□□ 0.42
SSX2IPQ9Y2D8 AC004890.2-204ENST00000481968 304 ntBASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms