Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 AC073347.1-201ENST00000421633 2643 ntBASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 AL031432.2-201ENST00000566714 459 ntBASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 AL928711.1-201ENST00000570165 459 ntBASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 AC117500.6-201ENST00000624871 588 ntBASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 PRAL-201ENST00000624952 3286 ntBASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMA1Q9UHB6 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 KRT18P67-201ENST00000432816 1264 ntBASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 AC093724.1-201ENST00000448659 1027 ntBASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 AL121912.1-201ENST00000603683 238 ntBASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 AC148477.8-201ENST00000624298 468 ntBASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIMA1Q9UHB6 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 EMBP1-201ENST00000458200 901 ntBASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 FAM215A-202ENST00000632077 792 ntBASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMA1Q9UHB6 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms