Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 GK-202ENST00000378941 458 ntTSL 3 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 COX5BP8-201ENST00000416911 349 ntBASIC16.82■□□□□ 0.28
TDP1Q9NUW8 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.82■□□□□ 0.28
TDP1Q9NUW8 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.81■□□□□ 0.28
TDP1Q9NUW8 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 DFFBP1-201ENST00000433250 979 ntBASIC16.81■□□□□ 0.28
TDP1Q9NUW8 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 DOC2GP-202ENST00000514950 1163 ntBASIC16.81■□□□□ 0.28
TDP1Q9NUW8 SDHAP3-202ENST00000515467 728 ntBASIC16.81■□□□□ 0.28
TDP1Q9NUW8 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 AC140912.1-201ENST00000577171 1054 ntBASIC16.81■□□□□ 0.28
TDP1Q9NUW8 AL365330.1-201ENST00000607459 531 ntBASIC16.81■□□□□ 0.28
TDP1Q9NUW8 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 MIR6069-201ENST00000620069 79 ntBASIC16.81■□□□□ 0.28
TDP1Q9NUW8 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
TDP1Q9NUW8 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 CU639417.3-201ENST00000624240 1404 ntBASIC16.8■□□□□ 0.28
TDP1Q9NUW8 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 AL391825.1-201ENST00000457671 1364 ntBASIC16.8■□□□□ 0.28
TDP1Q9NUW8 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.8■□□□□ 0.28
TDP1Q9NUW8 AC114501.2-201ENST00000439631 535 ntBASIC16.8■□□□□ 0.28
TDP1Q9NUW8 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms