Protein–RNA interactions for Protein: Q9NRR5

UBQLN4, Ubiquilin-4, humanhuman

Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN4Q9NRR5 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.13■□□□□ 0.01
UBQLN4Q9NRR5 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
UBQLN4Q9NRR5 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.13■□□□□ 0.01
UBQLN4Q9NRR5 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 AC046158.3-201ENST00000624947 2558 ntBASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 AC006449.6-201ENST00000612330 2296 ntBASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 YBX2P1-201ENST00000394192 760 ntBASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 MKNK2P1-201ENST00000437526 628 ntBASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 DNAJB3-201ENST00000446806 729 ntBASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 AC093724.1-201ENST00000448659 1027 ntBASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 AC092902.6-201ENST00000641783 218 ntBASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 REXO1L8P-201ENST00000604378 1897 ntBASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.12■□□□□ 0.01
UBQLN4Q9NRR5 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 AC073439.1-201ENST00000624121 1774 ntBASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 AL355306.1-201ENST00000415580 579 ntBASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 PCDH8P1-201ENST00000428983 2773 ntBASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
UBQLN4Q9NRR5 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms