Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC027307.2-201ENST00000591252 911 ntBASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 AC008267.7-201ENST00000624570 1194 ntBASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PTCHD1Q96NR3 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTCHD1Q96NR3 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTCHD1Q96NR3 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.52■□□□□ 0.07
PTCHD1Q96NR3 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.52■□□□□ 0.07
PTCHD1Q96NR3 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.52■□□□□ 0.07
PTCHD1Q96NR3 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
PTCHD1Q96NR3 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTCHD1Q96NR3 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.52■□□□□ 0.07
PTCHD1Q96NR3 GGT4P-201ENST00000623672 1708 ntBASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 KRT8P23-201ENST00000560090 1207 ntBASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 AL138918.1-201ENST00000568306 659 ntBASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTCHD1Q96NR3 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 AL627223.1-201ENST00000416693 442 ntBASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 AC092183.1-201ENST00000469884 875 ntBASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 AC069335.1-201ENST00000489972 472 ntBASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 LINC01225-203ENST00000563550 1244 ntBASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PTCHD1Q96NR3 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.49■□□□□ 0.07
PTCHD1Q96NR3 TNRC18P3-201ENST00000441896 2691 ntBASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms