Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 AL023775.1-201ENST00000454907 1746 ntBASIC16.34■□□□□ 0.21
TTC28Q96AY4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 AL157792.1-201ENST00000488281 530 ntBASIC16.34■□□□□ 0.21
TTC28Q96AY4 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 IGLV3-15-201ENST00000518356 244 ntBASIC16.34■□□□□ 0.21
TTC28Q96AY4 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 AC027139.1-201ENST00000565286 951 ntBASIC16.34■□□□□ 0.21
TTC28Q96AY4 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TTC28Q96AY4 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TTC28Q96AY4 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TTC28Q96AY4 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TTC28Q96AY4 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.21
TTC28Q96AY4 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TTC28Q96AY4 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
TTC28Q96AY4 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TTC28Q96AY4 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TTC28Q96AY4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TTC28Q96AY4 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TTC28Q96AY4 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TTC28Q96AY4 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TTC28Q96AY4 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TTC28Q96AY4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TTC28Q96AY4 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TTC28Q96AY4 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.33■□□□□ 0.2
TTC28Q96AY4 PRSS30P-206ENST00000641773 873 ntBASIC16.33■□□□□ 0.2
TTC28Q96AY4 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TTC28Q96AY4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TTC28Q96AY4 AL136982.4-201ENST00000437689 1740 ntBASIC16.32■□□□□ 0.2
TTC28Q96AY4 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TTC28Q96AY4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TTC28Q96AY4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.32■□□□□ 0.2
TTC28Q96AY4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TTC28Q96AY4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TTC28Q96AY4 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TTC28Q96AY4 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC16.32■□□□□ 0.2
TTC28Q96AY4 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC16.32■□□□□ 0.2
TTC28Q96AY4 POU5F1P6-201ENST00000466990 990 ntBASIC16.32■□□□□ 0.2
TTC28Q96AY4 RN7SL11P-201ENST00000471305 293 ntBASIC16.32■□□□□ 0.2
TTC28Q96AY4 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC16.32■□□□□ 0.2
TTC28Q96AY4 AC006453.1-201ENST00000636037 1257 ntBASIC16.32■□□□□ 0.2
TTC28Q96AY4 AC006453.4-201ENST00000636949 1252 ntBASIC16.32■□□□□ 0.2
TTC28Q96AY4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TTC28Q96AY4 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TTC28Q96AY4 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
TTC28Q96AY4 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TTC28Q96AY4 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TTC28Q96AY4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.32■□□□□ 0.2
TTC28Q96AY4 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TTC28Q96AY4 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 AL008707.1-201ENST00000422498 534 ntBASIC16.31■□□□□ 0.2
TTC28Q96AY4 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC16.31■□□□□ 0.2
TTC28Q96AY4 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
TTC28Q96AY4 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TTC28Q96AY4 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.31■□□□□ 0.2
TTC28Q96AY4 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
TTC28Q96AY4 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
TTC28Q96AY4 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC16.31■□□□□ 0.2
TTC28Q96AY4 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TTC28Q96AY4 AC005730.2-201ENST00000564549 1184 ntBASIC16.31■□□□□ 0.2
TTC28Q96AY4 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms