Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 AC011495.1-201ENST00000498085 584 ntBASIC20.28■□□□□ 0.84
SYNE4Q8N205 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 KRT17P8-201ENST00000540749 863 ntBASIC20.28■□□□□ 0.84
SYNE4Q8N205 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.28■□□□□ 0.84
SYNE4Q8N205 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.28■□□□□ 0.84
SYNE4Q8N205 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SYNE4Q8N205 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE4Q8N205 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE4Q8N205 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE4Q8N205 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE4Q8N205 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE4Q8N205 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE4Q8N205 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 MIR658-201ENST00000385210 100 ntBASIC20.27■□□□□ 0.84
SYNE4Q8N205 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE4Q8N205 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE4Q8N205 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.27■□□□□ 0.84
SYNE4Q8N205 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE4Q8N205 MIR6805-201ENST00000615055 62 ntBASIC20.27■□□□□ 0.84
SYNE4Q8N205 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE4Q8N205 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE4Q8N205 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SYNE4Q8N205 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SYNE4Q8N205 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC20.27■□□□□ 0.83
SYNE4Q8N205 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.83
SYNE4Q8N205 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
SYNE4Q8N205 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SYNE4Q8N205 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.27■□□□□ 0.83
SYNE4Q8N205 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC20.26■□□□□ 0.83
SYNE4Q8N205 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 SLC7A15P-201ENST00000424028 1363 ntBASIC20.26■□□□□ 0.83
SYNE4Q8N205 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC20.26■□□□□ 0.83
SYNE4Q8N205 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SYNE4Q8N205 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SYNE4Q8N205 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 AL139010.1-201ENST00000454878 894 ntBASIC20.26■□□□□ 0.83
SYNE4Q8N205 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC20.26■□□□□ 0.83
SYNE4Q8N205 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SYNE4Q8N205 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms