Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 AL080243.2-201ENST00000418783 582 ntBASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 AL589739.1-201ENST00000607720 493 ntBASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 CETN4P-206ENST00000642099 2168 ntBASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC60Q8IWA6 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 TSPY16P-201ENST00000449843 468 ntBASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 AL512638.1-201ENST00000457493 794 ntBASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 LHX6-205ENST00000464484 666 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 AL079307.3-201ENST00000556114 283 ntBASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC60Q8IWA6 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 AC236430.1-201ENST00000402231 743 ntBASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 POU5F1P6-201ENST00000466990 990 ntBASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 RN7SL204P-201ENST00000582831 262 ntBASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 NKILA-202ENST00000614771 2598 ntBASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC60Q8IWA6 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms