Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 AL671277.1-201ENST00000429656 993 ntBASIC19.84■□□□□ 0.77
VPS53Q5VIR6 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS53Q5VIR6 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 MTHFR-217ENST00000641820 1569 ntBASIC19.83■□□□□ 0.77
VPS53Q5VIR6 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 CEND1P1-201ENST00000451006 455 ntBASIC19.83■□□□□ 0.77
VPS53Q5VIR6 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 AL138918.1-201ENST00000568306 659 ntBASIC19.83■□□□□ 0.77
VPS53Q5VIR6 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.83■□□□□ 0.77
VPS53Q5VIR6 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS53Q5VIR6 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
VPS53Q5VIR6 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.83■□□□□ 0.76
VPS53Q5VIR6 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS53Q5VIR6 AL513523.2-202ENST00000427283 2040 ntBASIC19.83■□□□□ 0.76
VPS53Q5VIR6 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
VPS53Q5VIR6 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS53Q5VIR6 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 RARRES2P8-201ENST00000566335 367 ntBASIC19.82■□□□□ 0.76
VPS53Q5VIR6 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 MIR3687-2-201ENST00000577708 61 ntBASIC19.82■□□□□ 0.76
VPS53Q5VIR6 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 MIR3687-1-201ENST00000614492 61 ntBASIC19.82■□□□□ 0.76
VPS53Q5VIR6 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 WASH6P-202ENST00000359512 1437 ntBASIC19.82■□□□□ 0.76
VPS53Q5VIR6 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS53Q5VIR6 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms