Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN1P58418 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN1P58418 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.73□□□□□ -0.05
CLRN1P58418 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
CLRN1P58418 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
CLRN1P58418 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CLRN1P58418 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
CLRN1P58418 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN1P58418 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
CLRN1P58418 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN1P58418 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN1P58418 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN1P58418 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN1P58418 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
CLRN1P58418 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.72□□□□□ -0.05
CLRN1P58418 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.72□□□□□ -0.05
CLRN1P58418 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CLRN1P58418 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
CLRN1P58418 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
CLRN1P58418 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.72□□□□□ -0.05
CLRN1P58418 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
CLRN1P58418 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.72□□□□□ -0.05
CLRN1P58418 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
CLRN1P58418 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CLRN1P58418 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
CLRN1P58418 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
CLRN1P58418 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.72□□□□□ -0.05
CLRN1P58418 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.72□□□□□ -0.05
CLRN1P58418 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC14.72□□□□□ -0.05
CLRN1P58418 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.72□□□□□ -0.05
CLRN1P58418 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC14.72□□□□□ -0.05
CLRN1P58418 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC14.72□□□□□ -0.05
CLRN1P58418 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14.72□□□□□ -0.05
CLRN1P58418 BX640515.1-201ENST00000617215 977 ntBASIC14.72□□□□□ -0.05
CLRN1P58418 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.72□□□□□ -0.05
CLRN1P58418 AC004877.2-201ENST00000623941 599 ntBASIC14.72□□□□□ -0.05
CLRN1P58418 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.72□□□□□ -0.05
CLRN1P58418 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.72□□□□□ -0.05
CLRN1P58418 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.72□□□□□ -0.05
CLRN1P58418 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.72□□□□□ -0.05
CLRN1P58418 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLRN1P58418 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.72□□□□□ -0.05
CLRN1P58418 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN1P58418 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN1P58418 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN1P58418 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CLRN1P58418 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN1P58418 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN1P58418 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.71□□□□□ -0.05
CLRN1P58418 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN1P58418 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN1P58418 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN1P58418 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN1P58418 RNA5SP416-201ENST00000516838 111 ntBASIC14.71□□□□□ -0.05
CLRN1P58418 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
CLRN1P58418 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC14.71□□□□□ -0.05
CLRN1P58418 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.71□□□□□ -0.05
CLRN1P58418 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.71□□□□□ -0.05
CLRN1P58418 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.71□□□□□ -0.05
CLRN1P58418 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CLRN1P58418 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN1P58418 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.71□□□□□ -0.05
CLRN1P58418 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms