Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA1P55317 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.93■□□□□ 0.14
FOXA1P55317 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.93■□□□□ 0.14
FOXA1P55317 DBET-201ENST00000630918 3363 ntBASIC15.93■□□□□ 0.14
FOXA1P55317 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA1P55317 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA1P55317 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.92■□□□□ 0.14
FOXA1P55317 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
FOXA1P55317 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
FOXA1P55317 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.92■□□□□ 0.14
FOXA1P55317 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.92■□□□□ 0.14
FOXA1P55317 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
FOXA1P55317 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
FOXA1P55317 CXCL1P1-201ENST00000502804 216 ntBASIC15.92■□□□□ 0.14
FOXA1P55317 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.92■□□□□ 0.14
FOXA1P55317 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 MIR7706-201ENST00000613747 67 ntBASIC15.92■□□□□ 0.14
FOXA1P55317 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.92■□□□□ 0.14
FOXA1P55317 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.92■□□□□ 0.14
FOXA1P55317 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.92■□□□□ 0.14
FOXA1P55317 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
FOXA1P55317 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
FOXA1P55317 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
FOXA1P55317 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.91■□□□□ 0.14
FOXA1P55317 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.91■□□□□ 0.14
FOXA1P55317 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.91■□□□□ 0.14
FOXA1P55317 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.91■□□□□ 0.14
FOXA1P55317 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.91■□□□□ 0.14
FOXA1P55317 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 AC103702.1-201ENST00000548801 2630 ntBASIC15.91■□□□□ 0.14
FOXA1P55317 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.91■□□□□ 0.14
FOXA1P55317 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.91■□□□□ 0.14
FOXA1P55317 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.91■□□□□ 0.14
FOXA1P55317 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC15.91■□□□□ 0.14
FOXA1P55317 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.91■□□□□ 0.14
FOXA1P55317 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.91■□□□□ 0.14
FOXA1P55317 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.91■□□□□ 0.14
FOXA1P55317 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.91■□□□□ 0.14
FOXA1P55317 AL031055.1-201ENST00000606362 631 ntBASIC15.91■□□□□ 0.14
FOXA1P55317 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.91■□□□□ 0.14
FOXA1P55317 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
FOXA1P55317 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.91■□□□□ 0.14
FOXA1P55317 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.91■□□□□ 0.14
FOXA1P55317 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
FOXA1P55317 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.91■□□□□ 0.14
FOXA1P55317 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
FOXA1P55317 AC104640.1-201ENST00000562617 2109 ntBASIC15.91■□□□□ 0.14
FOXA1P55317 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
FOXA1P55317 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
FOXA1P55317 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
FOXA1P55317 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.9■□□□□ 0.14
FOXA1P55317 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
FOXA1P55317 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
FOXA1P55317 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
FOXA1P55317 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
FOXA1P55317 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
FOXA1P55317 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms