Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.53■□□□□ 0.08
RFX3P48380 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.53■□□□□ 0.08
RFX3P48380 AL365209.1-201ENST00000624418 6473 ntBASIC15.53■□□□□ 0.08
RFX3P48380 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
RFX3P48380 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
RFX3P48380 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
RFX3P48380 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 ALOX12P2-203ENST00000570921 1945 ntBASIC15.53■□□□□ 0.08
RFX3P48380 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.52■□□□□ 0.08
RFX3P48380 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.52■□□□□ 0.08
RFX3P48380 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 ZNF259P1-201ENST00000407656 1365 ntBASIC15.52■□□□□ 0.08
RFX3P48380 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
RFX3P48380 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
RFX3P48380 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.08
RFX3P48380 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
RFX3P48380 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
RFX3P48380 MIR940-201ENST00000401276 94 ntBASIC15.52■□□□□ 0.08
RFX3P48380 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
RFX3P48380 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.52■□□□□ 0.08
RFX3P48380 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.52■□□□□ 0.08
RFX3P48380 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RFX3P48380 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.52■□□□□ 0.08
RFX3P48380 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.52■□□□□ 0.08
RFX3P48380 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.52■□□□□ 0.08
RFX3P48380 AC018845.2-201ENST00000568326 409 ntBASIC15.52■□□□□ 0.08
RFX3P48380 CYP2A7P1-201ENST00000595391 815 ntBASIC15.52■□□□□ 0.08
RFX3P48380 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.52■□□□□ 0.08
RFX3P48380 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.52■□□□□ 0.07
RFX3P48380 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RFX3P48380 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
RFX3P48380 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.52■□□□□ 0.07
RFX3P48380 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RFX3P48380 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RFX3P48380 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.52■□□□□ 0.07
RFX3P48380 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RFX3P48380 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.52■□□□□ 0.07
RFX3P48380 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RFX3P48380 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
RFX3P48380 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RFX3P48380 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
RFX3P48380 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.51■□□□□ 0.07
RFX3P48380 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
RFX3P48380 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RFX3P48380 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.51■□□□□ 0.07
RFX3P48380 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.51■□□□□ 0.07
RFX3P48380 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.51■□□□□ 0.07
RFX3P48380 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.51■□□□□ 0.07
RFX3P48380 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.51■□□□□ 0.07
RFX3P48380 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.51■□□□□ 0.07
RFX3P48380 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.51■□□□□ 0.07
RFX3P48380 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.51■□□□□ 0.07
RFX3P48380 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.51■□□□□ 0.07
RFX3P48380 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.51■□□□□ 0.07
RFX3P48380 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.51■□□□□ 0.07
RFX3P48380 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.51■□□□□ 0.07
RFX3P48380 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.51■□□□□ 0.07
RFX3P48380 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.51■□□□□ 0.07
RFX3P48380 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.51■□□□□ 0.07
RFX3P48380 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.51■□□□□ 0.07
RFX3P48380 AC064836.3-201ENST00000607928 673 ntBASIC15.51■□□□□ 0.07
RFX3P48380 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.51■□□□□ 0.07
RFX3P48380 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
RFX3P48380 ACTL9-202ENST00000612068 1252 ntBASIC15.51■□□□□ 0.07
RFX3P48380 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms