Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL5A1P20908 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.52■□□□□ 0.07
COL5A1P20908 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL5A1P20908 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL5A1P20908 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL5A1P20908 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
COL5A1P20908 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL5A1P20908 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL5A1P20908 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.52■□□□□ 0.07
COL5A1P20908 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL5A1P20908 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
COL5A1P20908 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.52■□□□□ 0.07
COL5A1P20908 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.52■□□□□ 0.07
COL5A1P20908 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.52■□□□□ 0.07
COL5A1P20908 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.52■□□□□ 0.07
COL5A1P20908 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.52■□□□□ 0.07
COL5A1P20908 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL5A1P20908 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL5A1P20908 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.51■□□□□ 0.07
COL5A1P20908 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.51■□□□□ 0.07
COL5A1P20908 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.51■□□□□ 0.07
COL5A1P20908 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC15.51■□□□□ 0.07
COL5A1P20908 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.51■□□□□ 0.07
COL5A1P20908 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.51■□□□□ 0.07
COL5A1P20908 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
COL5A1P20908 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
COL5A1P20908 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC15.51■□□□□ 0.07
COL5A1P20908 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
COL5A1P20908 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.51■□□□□ 0.07
COL5A1P20908 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.51■□□□□ 0.07
COL5A1P20908 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.51■□□□□ 0.07
COL5A1P20908 RNA5SP412-201ENST00000516234 123 ntBASIC15.51■□□□□ 0.07
COL5A1P20908 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.51■□□□□ 0.07
COL5A1P20908 TIMM17BP1-201ENST00000545713 516 ntBASIC15.51■□□□□ 0.07
COL5A1P20908 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.51■□□□□ 0.07
COL5A1P20908 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
COL5A1P20908 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.51■□□□□ 0.07
COL5A1P20908 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.51■□□□□ 0.07
COL5A1P20908 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.51■□□□□ 0.07
COL5A1P20908 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.51■□□□□ 0.07
COL5A1P20908 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL5A1P20908 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.5■□□□□ 0.07
COL5A1P20908 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.5■□□□□ 0.07
COL5A1P20908 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.5■□□□□ 0.07
COL5A1P20908 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.5■□□□□ 0.07
COL5A1P20908 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.5■□□□□ 0.07
COL5A1P20908 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.5■□□□□ 0.07
COL5A1P20908 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.5■□□□□ 0.07
COL5A1P20908 CSF2RBP1-201ENST00000447905 391 ntBASIC15.5■□□□□ 0.07
COL5A1P20908 CTBP2P5-201ENST00000454986 1264 ntBASIC15.5■□□□□ 0.07
COL5A1P20908 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.5■□□□□ 0.07
COL5A1P20908 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.5■□□□□ 0.07
COL5A1P20908 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.5■□□□□ 0.07
COL5A1P20908 AC124283.3-201ENST00000570869 594 ntBASIC15.5■□□□□ 0.07
COL5A1P20908 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.5■□□□□ 0.07
COL5A1P20908 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
COL5A1P20908 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.5■□□□□ 0.07
COL5A1P20908 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
COL5A1P20908 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.5■□□□□ 0.07
COL5A1P20908 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.5■□□□□ 0.07
COL5A1P20908 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
COL5A1P20908 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms