Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
VPS4BO75351 AC005052.1-201ENST00000625181 2492 ntBASIC16.19■□□□□ 0.18
VPS4BO75351 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS4BO75351 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
VPS4BO75351 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VPS4BO75351 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
VPS4BO75351 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS4BO75351 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VPS4BO75351 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS4BO75351 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
VPS4BO75351 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
VPS4BO75351 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS4BO75351 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS4BO75351 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS4BO75351 FAM8A3P-201ENST00000427218 844 ntBASIC16.18■□□□□ 0.18
VPS4BO75351 AC009947.1-201ENST00000444350 727 ntBASIC16.18■□□□□ 0.18
VPS4BO75351 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS4BO75351 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS4BO75351 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
VPS4BO75351 MPDU1-223ENST00000582151 728 ntBASIC16.18■□□□□ 0.18
VPS4BO75351 AC011467.4-201ENST00000594891 528 ntBASIC16.18■□□□□ 0.18
VPS4BO75351 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS4BO75351 AC064836.3-201ENST00000607928 673 ntBASIC16.18■□□□□ 0.18
VPS4BO75351 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS4BO75351 AL022326.1-202ENST00000641533 845 ntBASIC16.18■□□□□ 0.18
VPS4BO75351 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 GGT4P-201ENST00000623672 1708 ntBASIC16.18■□□□□ 0.18
VPS4BO75351 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
VPS4BO75351 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS4BO75351 SNX33P1-201ENST00000592116 1762 ntBASIC16.18■□□□□ 0.18
VPS4BO75351 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS4BO75351 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4BO75351 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS4BO75351 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VPS4BO75351 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS4BO75351 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4BO75351 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
VPS4BO75351 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4BO75351 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.17■□□□□ 0.18
VPS4BO75351 AL512652.2-201ENST00000625156 1716 ntBASIC16.17■□□□□ 0.18
VPS4BO75351 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
VPS4BO75351 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
VPS4BO75351 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS4BO75351 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.17■□□□□ 0.18
VPS4BO75351 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.17■□□□□ 0.18
VPS4BO75351 POU5F1P6-201ENST00000466990 990 ntBASIC16.17■□□□□ 0.18
VPS4BO75351 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4BO75351 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS4BO75351 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS4BO75351 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4BO75351 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4BO75351 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
VPS4BO75351 MIR4492-201ENST00000581627 80 ntBASIC16.17■□□□□ 0.18
VPS4BO75351 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.17■□□□□ 0.18
VPS4BO75351 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
VPS4BO75351 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
VPS4BO75351 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
VPS4BO75351 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4BO75351 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 AC006449.6-201ENST00000612330 2296 ntBASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms