Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CHMP2AO43633 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.48■□□□□ 0.55
CHMP2AO43633 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP2AO43633 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CHMP2AO43633 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.48■□□□□ 0.55
CHMP2AO43633 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP2AO43633 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 AC093724.1-201ENST00000448659 1027 ntBASIC18.48■□□□□ 0.55
CHMP2AO43633 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP2AO43633 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CHMP2AO43633 ALG1L8P-201ENST00000533887 760 ntBASIC18.48■□□□□ 0.55
CHMP2AO43633 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.48■□□□□ 0.55
CHMP2AO43633 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.48■□□□□ 0.55
CHMP2AO43633 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.48■□□□□ 0.55
CHMP2AO43633 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.48■□□□□ 0.55
CHMP2AO43633 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
CHMP2AO43633 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP2AO43633 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP2AO43633 AC020916.1-201ENST00000587762 1774 ntBASIC18.47■□□□□ 0.55
CHMP2AO43633 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.47■□□□□ 0.55
CHMP2AO43633 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
CHMP2AO43633 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP2AO43633 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
CHMP2AO43633 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CHMP2AO43633 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CHMP2AO43633 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CHMP2AO43633 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP2AO43633 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP2AO43633 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP2AO43633 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.47■□□□□ 0.55
CHMP2AO43633 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP2AO43633 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.47■□□□□ 0.55
CHMP2AO43633 AC025678.2-201ENST00000562061 970 ntBASIC18.47■□□□□ 0.55
CHMP2AO43633 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.47■□□□□ 0.55
CHMP2AO43633 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP2AO43633 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.47■□□□□ 0.55
CHMP2AO43633 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
CHMP2AO43633 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 AL662844.4-201ENST00000606367 2838 ntBASIC18.47■□□□□ 0.55
CHMP2AO43633 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP2AO43633 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.47■□□□□ 0.55
CHMP2AO43633 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP2AO43633 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CHMP2AO43633 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP2AO43633 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP2AO43633 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP2AO43633 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP2AO43633 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP2AO43633 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP2AO43633 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CHMP2AO43633 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP2AO43633 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP2AO43633 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP2AO43633 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP2AO43633 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP2AO43633 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP2AO43633 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP2AO43633 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP2AO43633 AL645939.2-201ENST00000427340 991 ntBASIC18.46■□□□□ 0.55
CHMP2AO43633 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.46■□□□□ 0.55
CHMP2AO43633 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CHMP2AO43633 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP2AO43633 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP2AO43633 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP2AO43633 SPTSSB-204ENST00000617024 1292 ntBASIC18.46■□□□□ 0.55
CHMP2AO43633 MIR6080-201ENST00000617359 66 ntBASIC18.46■□□□□ 0.55
CHMP2AO43633 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP2AO43633 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP2AO43633 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP2AO43633 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CHMP2AO43633 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP2AO43633 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms