Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 AC141586.4-201ENST00000624558 1573 ntBASIC19.7■□□□□ 0.74
KCNIP3Q9Y2W7 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
KCNIP3Q9Y2W7 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KCNIP3Q9Y2W7 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC19.69■□□□□ 0.74
KCNIP3Q9Y2W7 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KCNIP3Q9Y2W7 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
KCNIP3Q9Y2W7 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KCNIP3Q9Y2W7 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
KCNIP3Q9Y2W7 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.69■□□□□ 0.74
KCNIP3Q9Y2W7 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.69■□□□□ 0.74
KCNIP3Q9Y2W7 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
KCNIP3Q9Y2W7 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
KCNIP3Q9Y2W7 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC19.68■□□□□ 0.74
KCNIP3Q9Y2W7 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.68■□□□□ 0.74
KCNIP3Q9Y2W7 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
KCNIP3Q9Y2W7 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KCNIP3Q9Y2W7 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KCNIP3Q9Y2W7 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
KCNIP3Q9Y2W7 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
KCNIP3Q9Y2W7 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 AC044849.2-201ENST00000606596 710 ntBASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 AC087741.3-201ENST00000624270 1347 ntBASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
KCNIP3Q9Y2W7 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KCNIP3Q9Y2W7 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KCNIP3Q9Y2W7 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KCNIP3Q9Y2W7 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.66■□□□□ 0.74
KCNIP3Q9Y2W7 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
KCNIP3Q9Y2W7 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KCNIP3Q9Y2W7 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
KCNIP3Q9Y2W7 BOD1-206ENST00000480951 814 ntTSL 2 BASIC19.66■□□□□ 0.74
KCNIP3Q9Y2W7 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
KCNIP3Q9Y2W7 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
KCNIP3Q9Y2W7 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
KCNIP3Q9Y2W7 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
KCNIP3Q9Y2W7 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
KCNIP3Q9Y2W7 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
KCNIP3Q9Y2W7 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
KCNIP3Q9Y2W7 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
KCNIP3Q9Y2W7 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
KCNIP3Q9Y2W7 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
KCNIP3Q9Y2W7 SLC6A10P-202ENST00000431994 2058 ntBASIC19.64■□□□□ 0.73
KCNIP3Q9Y2W7 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.64■□□□□ 0.73
KCNIP3Q9Y2W7 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
KCNIP3Q9Y2W7 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KCNIP3Q9Y2W7 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KCNIP3Q9Y2W7 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KCNIP3Q9Y2W7 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
KCNIP3Q9Y2W7 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC19.63■□□□□ 0.73
KCNIP3Q9Y2W7 AC068473.5-201ENST00000616428 2072 ntBASIC19.63■□□□□ 0.73
KCNIP3Q9Y2W7 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
KCNIP3Q9Y2W7 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 AL359504.2-201ENST00000605506 1601 ntBASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 DUX4L29-201ENST00000425409 679 ntBASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 AC008813.1-201ENST00000536597 885 ntBASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 AC021231.2-201ENST00000594613 730 ntBASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KCNIP3Q9Y2W7 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
KCNIP3Q9Y2W7 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
KCNIP3Q9Y2W7 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
KCNIP3Q9Y2W7 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.61■□□□□ 0.73
KCNIP3Q9Y2W7 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
KCNIP3Q9Y2W7 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
KCNIP3Q9Y2W7 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KCNIP3Q9Y2W7 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KCNIP3Q9Y2W7 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
KCNIP3Q9Y2W7 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
KCNIP3Q9Y2W7 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
KCNIP3Q9Y2W7 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms