Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 AC092580.3-201ENST00000430932 139 ntBASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 KLF2P3-201ENST00000451977 1087 ntBASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 COQ9-214ENST00000567933 882 ntTSL 3 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 AL596087.1-201ENST00000400979 1969 ntBASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
TRIM35Q9UPQ4 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 PNMT-202ENST00000394246 821 ntTSL 2 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 AL136982.4-201ENST00000437689 1740 ntBASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.25■□□□□ 0.99
TRIM35Q9UPQ4 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 AC005498.2-205ENST00000593218 784 ntBASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 RN7SL828P-201ENST00000607615 303 ntBASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM35Q9UPQ4 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 FAM86GP-201ENST00000448322 971 ntBASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC21.23■□□□□ 0.99
TRIM35Q9UPQ4 AC140878.1-201ENST00000565277 250 ntBASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms