Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 RPS2P32-201ENST00000439199 892 ntBASIC20.78■□□□□ 0.92
SCN11AQ9UI33 AC234783.1-201ENST00000441761 496 ntBASIC20.78■□□□□ 0.92
SCN11AQ9UI33 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 MIR5189-201ENST00000577370 114 ntBASIC20.78■□□□□ 0.92
SCN11AQ9UI33 AC015936.2-201ENST00000593177 259 ntBASIC20.78■□□□□ 0.92
SCN11AQ9UI33 AL033527.4-201ENST00000641026 673 ntBASIC20.78■□□□□ 0.92
SCN11AQ9UI33 CDC14C-201ENST00000428251 1719 ntBASIC20.78■□□□□ 0.92
SCN11AQ9UI33 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SCN11AQ9UI33 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 NSL1-201ENST00000366976 722 ntTSL 2 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SCN11AQ9UI33 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SCN11AQ9UI33 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.91
SCN11AQ9UI33 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SCN11AQ9UI33 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC20.77■□□□□ 0.91
SCN11AQ9UI33 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC20.77■□□□□ 0.91
SCN11AQ9UI33 KRT223P-202ENST00000449164 1292 ntBASIC20.77■□□□□ 0.91
SCN11AQ9UI33 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
SCN11AQ9UI33 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC20.77■□□□□ 0.91
SCN11AQ9UI33 AL049840.4-201ENST00000602422 811 ntBASIC20.77■□□□□ 0.91
SCN11AQ9UI33 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
SCN11AQ9UI33 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
SCN11AQ9UI33 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SCN11AQ9UI33 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 MIR658-201ENST00000385210 100 ntBASIC20.76■□□□□ 0.91
SCN11AQ9UI33 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 VILL-207ENST00000465644 1857 ntTSL 5 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 RN7SL399P-201ENST00000471648 279 ntBASIC20.76■□□□□ 0.91
SCN11AQ9UI33 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 AC005052.1-201ENST00000625181 2492 ntBASIC20.76■□□□□ 0.91
SCN11AQ9UI33 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SCN11AQ9UI33 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms