Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AC093484.2-201ENST00000580996 2166 ntBASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 HPGD-203ENST00000422112 805 ntTSL 2 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 PFN2-206ENST00000461930 606 ntTSL 4 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 AL138709.1-201ENST00000614840 1693 ntBASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL25A1Q9BXS0 KRT8P49-201ENST00000604166 1432 ntBASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 AL137060.1-201ENST00000618151 2648 ntBASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 SCARNA21-201ENST00000517026 139 ntBASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 AC244157.2-201ENST00000616239 1006 ntBASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 AC138932.1-201ENST00000534164 6830 ntBASIC16.28■□□□□ 0.2
COL25A1Q9BXS0 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 TPM3P8-201ENST00000330554 643 ntBASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 AC244250.3-201ENST00000620749 366 ntBASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 BX539320.1-201ENST00000623759 877 ntBASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
COL25A1Q9BXS0 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC16.27■□□□□ 0.19
COL25A1Q9BXS0 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL25A1Q9BXS0 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
COL25A1Q9BXS0 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms