Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.38■□□□□ 0.69
BRF1Q92994 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.38■□□□□ 0.69
BRF1Q92994 AL078644.1-201ENST00000609881 752 ntBASIC19.38■□□□□ 0.69
BRF1Q92994 AC008894.3-201ENST00000624324 3103 ntBASIC19.38■□□□□ 0.69
BRF1Q92994 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
BRF1Q92994 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
BRF1Q92994 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.38■□□□□ 0.69
BRF1Q92994 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC19.38■□□□□ 0.69
BRF1Q92994 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BRF1Q92994 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.37■□□□□ 0.69
BRF1Q92994 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
BRF1Q92994 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.37■□□□□ 0.69
BRF1Q92994 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.37■□□□□ 0.69
BRF1Q92994 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.37■□□□□ 0.69
BRF1Q92994 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.37■□□□□ 0.69
BRF1Q92994 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
BRF1Q92994 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 POLD2P1-201ENST00000511220 997 ntBASIC19.37■□□□□ 0.69
BRF1Q92994 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.37■□□□□ 0.69
BRF1Q92994 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.37■□□□□ 0.69
BRF1Q92994 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.37■□□□□ 0.69
BRF1Q92994 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.37■□□□□ 0.69
BRF1Q92994 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.37■□□□□ 0.69
BRF1Q92994 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
BRF1Q92994 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
BRF1Q92994 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BRF1Q92994 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
BRF1Q92994 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BRF1Q92994 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC19.36■□□□□ 0.69
BRF1Q92994 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BRF1Q92994 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
BRF1Q92994 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.36■□□□□ 0.69
BRF1Q92994 FUK-207ENST00000571514 3054 ntTSL 2 BASIC19.36■□□□□ 0.69
BRF1Q92994 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
BRF1Q92994 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BRF1Q92994 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
BRF1Q92994 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
BRF1Q92994 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC19.36■□□□□ 0.69
BRF1Q92994 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.36■□□□□ 0.69
BRF1Q92994 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BRF1Q92994 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.36■□□□□ 0.69
BRF1Q92994 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
BRF1Q92994 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.36■□□□□ 0.69
BRF1Q92994 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.36■□□□□ 0.69
BRF1Q92994 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BRF1Q92994 AC099522.2-201ENST00000607001 744 ntBASIC19.36■□□□□ 0.69
BRF1Q92994 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.36■□□□□ 0.69
BRF1Q92994 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.36■□□□□ 0.69
BRF1Q92994 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
BRF1Q92994 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
BRF1Q92994 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.36■□□□□ 0.69
BRF1Q92994 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BRF1Q92994 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC19.36■□□□□ 0.69
BRF1Q92994 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.36■□□□□ 0.69
BRF1Q92994 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BRF1Q92994 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BRF1Q92994 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BRF1Q92994 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BRF1Q92994 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
BRF1Q92994 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
BRF1Q92994 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.35■□□□□ 0.69
BRF1Q92994 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.35■□□□□ 0.69
BRF1Q92994 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
BRF1Q92994 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
BRF1Q92994 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.35■□□□□ 0.69
BRF1Q92994 AC046158.3-201ENST00000624947 2558 ntBASIC19.35■□□□□ 0.69
BRF1Q92994 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 AP000347.1-202ENST00000435868 847 ntBASIC19.35■□□□□ 0.69
BRF1Q92994 KRT18P34-201ENST00000488218 1270 ntBASIC19.35■□□□□ 0.69
BRF1Q92994 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.35■□□□□ 0.69
BRF1Q92994 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.35■□□□□ 0.69
BRF1Q92994 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.35■□□□□ 0.69
BRF1Q92994 AL671883.3-201ENST00000603274 991 ntBASIC19.35■□□□□ 0.69
BRF1Q92994 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.35■□□□□ 0.69
BRF1Q92994 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.35■□□□□ 0.69
BRF1Q92994 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
BRF1Q92994 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.35■□□□□ 0.69
BRF1Q92994 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms