Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 AC087499.6-201ENST00000411576 835 ntBASIC20.31■□□□□ 0.84
SYNE4Q8N205 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 SRD5A3P1-201ENST00000603021 949 ntBASIC20.31■□□□□ 0.84
SYNE4Q8N205 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC20.31■□□□□ 0.84
SYNE4Q8N205 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 AC005052.1-201ENST00000625181 2492 ntBASIC20.31■□□□□ 0.84
SYNE4Q8N205 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SYNE4Q8N205 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SYNE4Q8N205 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 HTR7P1-202ENST00000624664 4411 ntBASIC20.3■□□□□ 0.84
SYNE4Q8N205 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE4Q8N205 AC022211.2-201ENST00000585075 2527 ntBASIC20.3■□□□□ 0.84
SYNE4Q8N205 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE4Q8N205 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE4Q8N205 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE4Q8N205 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE4Q8N205 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE4Q8N205 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE4Q8N205 AC112492.5-201ENST00000421897 457 ntBASIC20.3■□□□□ 0.84
SYNE4Q8N205 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 AC023310.3-201ENST00000557027 670 ntBASIC20.3■□□□□ 0.84
SYNE4Q8N205 AC100756.1-201ENST00000562736 682 ntBASIC20.3■□□□□ 0.84
SYNE4Q8N205 AC138749.3-201ENST00000567691 622 ntBASIC20.3■□□□□ 0.84
SYNE4Q8N205 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 AC116165.1-201ENST00000611806 668 ntBASIC20.3■□□□□ 0.84
SYNE4Q8N205 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
SYNE4Q8N205 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE4Q8N205 AL391825.1-201ENST00000457671 1364 ntBASIC20.3■□□□□ 0.84
SYNE4Q8N205 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE4Q8N205 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE4Q8N205 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SYNE4Q8N205 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE4Q8N205 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE4Q8N205 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE4Q8N205 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE4Q8N205 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 AC098850.1-201ENST00000419919 790 ntBASIC20.29■□□□□ 0.84
SYNE4Q8N205 HIST3H2BA-201ENST00000436555 524 ntBASIC20.29■□□□□ 0.84
SYNE4Q8N205 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE4Q8N205 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.29■□□□□ 0.84
SYNE4Q8N205 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SYNE4Q8N205 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms