Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 AC024909.3-201ENST00000611513 2257 ntBASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 LINC01225-203ENST00000563550 1244 ntBASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 PMS2P4-201ENST00000412466 1052 ntBASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 KLF2P3-201ENST00000451977 1087 ntBASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 INGX-202ENST00000489074 768 ntBASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 IGHV3-62-201ENST00000520057 340 ntBASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 AC239800.4-201ENST00000603712 296 ntBASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC144BQ3MJ40 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 MIR943-201ENST00000401286 94 ntBASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 UXT-AS1-201ENST00000590504 1525 ntBASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 AC105917.1-201ENST00000506637 2539 ntBASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CCDC144BQ3MJ40 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC144BQ3MJ40 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
CCDC144BQ3MJ40 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC144BQ3MJ40 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC144BQ3MJ40 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC144BQ3MJ40 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC144BQ3MJ40 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC144BQ3MJ40 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms