Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
CHD9Q3L8U1 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 AC067852.2-201ENST00000590513 2313 ntBASIC17.1■□□□□ 0.33
CHD9Q3L8U1 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 Z93015.1-201ENST00000451718 390 ntBASIC17.1■□□□□ 0.33
CHD9Q3L8U1 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 FADS2-212ENST00000522639 360 ntTSL 5 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 FADS2-215ENST00000574708 385 ntTSL 3 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 AL022328.3-201ENST00000607943 679 ntBASIC17.1■□□□□ 0.33
CHD9Q3L8U1 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.1■□□□□ 0.33
CHD9Q3L8U1 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 AC008764.6-201ENST00000595909 2069 ntBASIC17.09■□□□□ 0.33
CHD9Q3L8U1 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 NEFHP1-201ENST00000412845 2629 ntBASIC17.09■□□□□ 0.33
CHD9Q3L8U1 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 EIF4HP1-201ENST00000453115 687 ntBASIC17.09■□□□□ 0.33
CHD9Q3L8U1 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 LINC02012-201ENST00000608206 1725 ntBASIC17.09■□□□□ 0.33
CHD9Q3L8U1 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 SLC25A24P2-201ENST00000415059 510 ntBASIC17.09■□□□□ 0.33
CHD9Q3L8U1 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CHD9Q3L8U1 AC018735.1-201ENST00000437208 1502 ntBASIC17.09■□□□□ 0.33
CHD9Q3L8U1 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CHD9Q3L8U1 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CHD9Q3L8U1 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
CHD9Q3L8U1 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.08■□□□□ 0.33
CHD9Q3L8U1 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.08■□□□□ 0.33
CHD9Q3L8U1 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CHD9Q3L8U1 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.08■□□□□ 0.33
CHD9Q3L8U1 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.08■□□□□ 0.33
CHD9Q3L8U1 AC007613.1-201ENST00000572811 2597 ntBASIC17.08■□□□□ 0.33
CHD9Q3L8U1 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CHD9Q3L8U1 AC120498.9-201ENST00000339021 3867 ntBASIC17.08■□□□□ 0.32
CHD9Q3L8U1 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 REXO1L8P-201ENST00000604378 1897 ntBASIC17.08■□□□□ 0.32
CHD9Q3L8U1 AC134043.2-201ENST00000624206 2238 ntBASIC17.08■□□□□ 0.32
CHD9Q3L8U1 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
CHD9Q3L8U1 AL355864.2-201ENST00000447420 863 ntBASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms