Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.95■□□□□ 0.14
FOXA1P55317 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.95■□□□□ 0.14
FOXA1P55317 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
FOXA1P55317 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.95■□□□□ 0.14
FOXA1P55317 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 MIR4515-201ENST00000584082 81 ntBASIC15.95■□□□□ 0.14
FOXA1P55317 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.95■□□□□ 0.14
FOXA1P55317 AL049840.3-201ENST00000602669 611 ntBASIC15.95■□□□□ 0.14
FOXA1P55317 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.95■□□□□ 0.14
FOXA1P55317 AL691432.3-201ENST00000621860 400 ntBASIC15.95■□□□□ 0.14
FOXA1P55317 FAM215A-202ENST00000632077 792 ntBASIC15.95■□□□□ 0.14
FOXA1P55317 PGM5P2-202ENST00000637225 1043 ntBASIC15.95■□□□□ 0.14
FOXA1P55317 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.95■□□□□ 0.14
FOXA1P55317 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.95■□□□□ 0.14
FOXA1P55317 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.95■□□□□ 0.14
FOXA1P55317 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.95■□□□□ 0.14
FOXA1P55317 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
FOXA1P55317 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.94■□□□□ 0.14
FOXA1P55317 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
FOXA1P55317 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.94■□□□□ 0.14
FOXA1P55317 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.94■□□□□ 0.14
FOXA1P55317 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
FOXA1P55317 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.94■□□□□ 0.14
FOXA1P55317 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 RNU1-129P-201ENST00000384064 167 ntBASIC15.94■□□□□ 0.14
FOXA1P55317 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.94■□□□□ 0.14
FOXA1P55317 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.94■□□□□ 0.14
FOXA1P55317 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.94■□□□□ 0.14
FOXA1P55317 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
FOXA1P55317 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC15.94■□□□□ 0.14
FOXA1P55317 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.94■□□□□ 0.14
FOXA1P55317 AF186996.4-201ENST00000467186 377 ntBASIC15.94■□□□□ 0.14
FOXA1P55317 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
FOXA1P55317 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 U1.21-201ENST00000580816 167 ntBASIC15.94■□□□□ 0.14
FOXA1P55317 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
FOXA1P55317 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.94■□□□□ 0.14
FOXA1P55317 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.94■□□□□ 0.14
FOXA1P55317 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
FOXA1P55317 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
FOXA1P55317 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.94■□□□□ 0.14
FOXA1P55317 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.94■□□□□ 0.14
FOXA1P55317 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
FOXA1P55317 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.93■□□□□ 0.14
FOXA1P55317 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA1P55317 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA1P55317 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA1P55317 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
FOXA1P55317 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA1P55317 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.93■□□□□ 0.14
FOXA1P55317 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA1P55317 AP003680.1-201ENST00000598970 3660 ntBASIC15.93■□□□□ 0.14
FOXA1P55317 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA1P55317 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA1P55317 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA1P55317 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
FOXA1P55317 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.93■□□□□ 0.14
FOXA1P55317 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.93■□□□□ 0.14
FOXA1P55317 IPPK-202ENST00000375522 882 ntTSL 3 BASIC15.93■□□□□ 0.14
FOXA1P55317 AC092910.1-201ENST00000482027 1129 ntBASIC15.93■□□□□ 0.14
FOXA1P55317 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.93■□□□□ 0.14
FOXA1P55317 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.93■□□□□ 0.14
FOXA1P55317 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.93■□□□□ 0.14
FOXA1P55317 AL160237.2-201ENST00000556165 472 ntBASIC15.93■□□□□ 0.14
FOXA1P55317 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.93■□□□□ 0.14
FOXA1P55317 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms